Regulog Trp_leader - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | Trp_leader |
| RFAM: | RF00513 |
| Regulation mode: | |
| Biological process: | Tryptophan biosynthesis |
| Effector: | |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - Trp_leader
- By pathway - Tryptophan biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | ||
| Thermotoga sp. RQ2 | ||
| Thermotoga neapolitana DSM 4359 | ||
| Thermotoga petrophila RKU-1 | ||
| Thermotoga naphthophila RKU-10 | ||
| Thermotoga lettingae TMO | 1 | 1 |
| Thermosipho africanus TCF52B | 1 | 1 |
| Thermosipho melanesiensis BI429 | 1 | 1 |
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | ||
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| trpB |
|
Gene: TRQ2_0398: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Gene: CTN_0129: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Gene: Tpet_0382: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Gene: Tnap_0319: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Thermotoga lettingae TMO Site: position = -125 score = 24.73 sequence = CATGTGGTGGTGGTA... Gene: Tlet_1887: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*2
Thermosipho africanus TCF52B Gene: THA_1948: Tryptophan synthase beta chain like (EC 4.2.1.20) Site: position = -131 score = 14.7 sequence = TTTTGCATGGTGGTG... Gene: THA_1014: Tryptophan synthase beta chain like (EC 4.2.1.20) |
*
Thermosipho melanesiensis BI429 Site: position = -127 score = 19.01 sequence = AAAGGTTTGGTGGTG... Gene: Tmel_0725: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Gene: Fnod_1254: Tryptophan synthase beta chain like (EC 4.2.1.20) |
|
Gene: Kole_0695: Tryptophan synthase beta chain like (EC 4.2.1.20) |
Tryptophan synthase beta chain like (EC 4.2.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |