Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog Trp_leader - Thermotogales

Properties
Regulator type: RNA regulatory element
Name: Trp_leader
RFAM: RF00513
Regulation mode:
Biological process: Tryptophan biosynthesis
Effector:
Phylum: Thermotogae
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Thermotoga maritima MSB8
Thermotoga sp. RQ2
Thermotoga neapolitana DSM 4359
Thermotoga petrophila RKU-1
Thermotoga naphthophila RKU-10
Thermotoga lettingae TMO 1 1
Thermosipho africanus TCF52B 1 1
Thermosipho melanesiensis BI429 1 1
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95
Thermotogales bacterium TBF 19.5.1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
trpB
 
Thermotoga maritima MSB8
 
Thermotoga sp. RQ2

Gene: TRQ2_0398: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Thermotoga neapolitana DSM 4359

Gene: CTN_0129: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Thermotoga petrophila RKU-1

Gene: Tpet_0382: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Thermotoga naphthophila RKU-10

Gene: Tnap_0319: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Thermotoga lettingae TMO

Site:
position = -125
score = 24.73
sequence = CATGTGGTGGTGGTA...

Gene: Tlet_1887: Tryptophan synthase beta chain like (EC 4.2.1.20)
*2
Thermosipho africanus TCF52B

Gene: THA_1948: Tryptophan synthase beta chain like (EC 4.2.1.20)

Site:
position = -131
score = 14.7
sequence = TTTTGCATGGTGGTG...

Gene: THA_1014: Tryptophan synthase beta chain like (EC 4.2.1.20)
*
Thermosipho melanesiensis BI429

Site:
position = -127
score = 19.01
sequence = AAAGGTTTGGTGGTG...

Gene: Tmel_0725: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Fervidobacterium nodosum Rt17-B1

Gene: Fnod_1254: Tryptophan synthase beta chain like (EC 4.2.1.20)
 
Petrotoga mobilis SJ95
 
Thermotogales bacterium TBF 19.5.1

Gene: Kole_0695: Tryptophan synthase beta chain like (EC 4.2.1.20)
Tryptophan synthase beta chain like (EC 4.2.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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