Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog S15 - Corynebacteriaceae

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium glutamicum ATCC 13032 1 1
Corynebacterium efficiens YS-314 1 1
Corynebacterium diphtheriae NCTC 13129 1 1
Corynebacterium aurimucosum ATCC 700975 1 1
Corynebacterium jeikeium K411
Corynebacterium urealyticum DSM 7109 1 1
Corynebacterium amycolatum SK46 1 1
Corynebacterium kroppenstedtii DSM 44385 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -65
score = 28.42
sequence = GGGTTTATCTTGGAT...

Gene: cg2167: 30S ribosomal protein S15
*
Corynebacterium efficiens YS-314

Site:
position = -52
score = 18.59
sequence = GGTGCGTGGTGAAAA...

Gene: CE1869: 30S ribosomal protein S15
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -60
score = 26.6
sequence = ATTTTGTAGCTAGAG...

Gene: DIP1468: 30S ribosomal protein S15
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -59
score = 25.69
sequence = CAGGCAGCGCCTTAA...

Gene: cauri_1521: 30S ribosomal protein S15
 
Corynebacterium jeikeium K411

Gene: jk1135: 30S ribosomal protein S15
*
Corynebacterium urealyticum DSM 7109

Site:
position = -51
score = 14.84
sequence = GGGCAGTCTTTAAGA...

Gene: cur_0858: 30S ribosomal protein S15
*
Corynebacterium amycolatum SK46

Site:
position = -49
score = 13.7
sequence = ATGTGGACTGAAACA...

Gene: CORAM0001_0816: 30S ribosomal protein S15
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -74
score = 34.25
sequence = TTGTGAAAGCTGTGC...

Gene: ckrop_1135: 30S ribosomal protein S15
30S ribosomal protein S15
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD