Regulog L21_leader - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	L21_leader
RFAM:	RF00559
Regulation mode:
Biological process:	Ribosome biogenesis
Effector:
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - L21_leader
By pathway - Ribosome biogenesis

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315
Staphylococcus capitis SK14	3	1
Staphylococcus epidermidis ATCC 12228	3	1
Staphylococcus carnosus subsp. carnosus TM300	3	1
Staphylococcus haemolyticus JCSC1435	3	1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	3	1
Macrococcus caseolyticus JCSC5402	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
rplU	Staphylococcus aureus subsp. aureus N315 Gene: SA1473: LSU ribosomal protein L21p	* Staphylococcus capitis SK14 Site: position = -138 score = 31.93 sequence = CATACAACCGCTCAA... Gene: STACA0001_2373: LSU ribosomal protein L21p	* Staphylococcus epidermidis ATCC 12228 Site: position = -90 score = 56.36 sequence = AAGCTACATACAACC... Gene: SE1330: LSU ribosomal protein L21p	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -92 score = 53.85 sequence = TAGCTACATACAACC... Gene: Sca_1258a: LSU ribosomal protein L21p	* Staphylococcus haemolyticus JCSC1435 Site: position = -90 score = 55.18 sequence = GCTACATACAACCGC... Gene: SH1273: LSU ribosomal protein L21p	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -86 score = 52.6 sequence = GCTACATACAACCGC... Gene: SSP1112: LSU ribosomal protein L21p	* Macrococcus caseolyticus JCSC5402 Site: position = -86 score = 47.53 sequence = AAGCTACATACAACC... Gene: MCCL_1285: LSU ribosomal protein L21p	LSU ribosomal protein L21p
ysxB	Staphylococcus aureus subsp. aureus N315 Gene: SA1472: FIG139598: Potential ribosomal protein	Staphylococcus capitis SK14 Gene: STACA0001_2374: FIG139598: Potential ribosomal protein	Staphylococcus epidermidis ATCC 12228 Gene: SE1329: FIG139598: Potential ribosomal protein	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1257: FIG139598: Potential ribosomal protein	Staphylococcus haemolyticus JCSC1435 Gene: SH1274: FIG139598: Potential ribosomal protein	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1113: FIG139598: Potential ribosomal protein	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1284: FIG139598: Potential ribosomal protein	FIG139598: Potential ribosomal protein
rpmA	Staphylococcus aureus subsp. aureus N315 Gene: SA1471: LSU ribosomal protein L27p	Staphylococcus capitis SK14 Gene: STACA0001_2375: LSU ribosomal protein L27p	Staphylococcus epidermidis ATCC 12228 Gene: SE1328: LSU ribosomal protein L27p	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1256: LSU ribosomal protein L27p	Staphylococcus haemolyticus JCSC1435 Gene: SH1275: LSU ribosomal protein L27p	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP1114: LSU ribosomal protein L27p	Macrococcus caseolyticus JCSC5402	LSU ribosomal protein L27p

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog L21_leader - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --