Regulog L21_leader - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | L21_leader |
| RFAM: | RF00559 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - L21_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | ||
| Staphylococcus capitis SK14 | 3 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 3 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 3 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 3 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 3 | 1 |
| Macrococcus caseolyticus JCSC5402 | 2 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| rplU |
Gene: SA1473: LSU ribosomal protein L21p |
*
Staphylococcus capitis SK14 Site: position = -138 score = 31.93 sequence = CATACAACCGCTCAA... Gene: STACA0001_2373: LSU ribosomal protein L21p |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -90 score = 56.36 sequence = AAGCTACATACAACC... Gene: SE1330: LSU ribosomal protein L21p |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -92 score = 53.85 sequence = TAGCTACATACAACC... Gene: Sca_1258a: LSU ribosomal protein L21p |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -90 score = 55.18 sequence = GCTACATACAACCGC... Gene: SH1273: LSU ribosomal protein L21p |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -86 score = 52.6 sequence = GCTACATACAACCGC... Gene: SSP1112: LSU ribosomal protein L21p |
*
Macrococcus caseolyticus JCSC5402 Site: position = -86 score = 47.53 sequence = AAGCTACATACAACC... Gene: MCCL_1285: LSU ribosomal protein L21p |
LSU ribosomal protein L21p |
| ysxB |
Gene: SA1472: FIG139598: Potential ribosomal protein |
Gene: STACA0001_2374: FIG139598: Potential ribosomal protein |
Gene: SE1329: FIG139598: Potential ribosomal protein |
Gene: Sca_1257: FIG139598: Potential ribosomal protein |
Gene: SH1274: FIG139598: Potential ribosomal protein |
Gene: SSP1113: FIG139598: Potential ribosomal protein |
Gene: MCCL_1284: FIG139598: Potential ribosomal protein |
FIG139598: Potential ribosomal protein |
| rpmA |
Gene: SA1471: LSU ribosomal protein L27p |
Gene: STACA0001_2375: LSU ribosomal protein L27p |
Gene: SE1328: LSU ribosomal protein L27p |
Gene: Sca_1256: LSU ribosomal protein L27p |
Gene: SH1275: LSU ribosomal protein L27p |
Gene: SSP1114: LSU ribosomal protein L27p |
|
LSU ribosomal protein L27p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |