Regulog L20_leader - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - L20_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 1 |
| Bacillus amyloliquefaciens FZB42 | 3 | 1 |
| Bacillus pumilus SAFR-032 | ||
| Bacillus licheniformis DSM 13 | 3 | 1 |
| Anoxybacillus flavithermus WK1 | 3 | 1 |
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | 3 | 1 |
| Bacillus halodurans C-125 | 3 | 1 |
| Bacillus clausii KSM-K16 | 3 | 1 |
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| infC |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -190 score = 85.74 sequence = AAATCACAAGCAGAA... Gene: BSU28870: Translation initiation factor 3 |
*
Bacillus amyloliquefaciens FZB42 Site: position = -208 score = 80.98 sequence = AAATCACAAGCAGAG... Gene: RBAM_025930: Translation initiation factor 3 |
|
*
Bacillus licheniformis DSM 13 Site: position = -84 score = 79.87 sequence = TATCAACAAGCAGAA... Gene: BLi03035: Translation initiation factor 3 |
*
Anoxybacillus flavithermus WK1 Site: position = -148 score = 72.9 sequence = GAAACAAGCAGAAGC... Gene: Aflv_0522: Translation initiation factor 3 |
Gene: GK2718: Translation initiation factor 3 |
*
Bacillus cereus ATCC 14579 Site: position = -185 score = 88.76 sequence = GTGGAACAAGTAGAA... Gene: BC4575: Translation initiation factor 3 |
*
Bacillus halodurans C-125 Site: position = -156 score = 74.53 sequence = TCAAAGCAAGAAGGA... Gene: BH3140: Translation initiation factor 3 |
*
Bacillus clausii KSM-K16 Site: position = -187 score = 80.71 sequence = ATAGAGCAAGAAGAA... Gene: ABC2689: Translation initiation factor 3 |
*
Oceanobacillus iheyensis HTE831 Site: position = -197 score = 79.96 sequence = CTAAGACAAGTAGAA... Gene: OB2152: Translation initiation factor 3 |
*
Paenibacillus sp. JDR-2 Site: position = -134 score = 39.43 sequence = TGCACAAGCAGAAGC... Gene: Pjdr2_1288: Translation initiation factor 3 |
Translation initiation factor 3 |
| rpmI |
Gene: BSU28860: LSU ribosomal protein L35p |
Gene: RBAM_025920: LSU ribosomal protein L35p |
Gene: BPUM_2531: LSU ribosomal protein L35p |
Gene: BLi03034: LSU ribosomal protein L35p |
Gene: Aflv_0523: LSU ribosomal protein L35p |
Gene: GK2717: LSU ribosomal protein L35p |
Gene: BC4574: LSU ribosomal protein L35p |
Gene: BH3139: LSU ribosomal protein L35p |
Gene: ABC2688: LSU ribosomal protein L35p |
Gene: OB2151: LSU ribosomal protein L35p |
Gene: Pjdr2_1289: LSU ribosomal protein L35p |
LSU ribosomal protein L35p |
| rplT |
Gene: BSU28850: LSU ribosomal protein L20p |
Gene: RBAM_025910: LSU ribosomal protein L20p |
Gene: BPUM_2530: LSU ribosomal protein L20p |
Gene: BLi03033: LSU ribosomal protein L20p |
Gene: Aflv_0524: LSU ribosomal protein L20p |
Gene: GK2716: LSU ribosomal protein L20p |
Gene: BC4573: LSU ribosomal protein L20p |
Gene: BH3138: LSU ribosomal protein L20p |
Gene: ABC2687: LSU ribosomal protein L20p |
Gene: OB2150: LSU ribosomal protein L20p |
Gene: Pjdr2_1290: LSU ribosomal protein L20p |
LSU ribosomal protein L20p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |