Regulog L20_leader - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | L20_leader |
| RFAM: | RF00558 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - L20_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 3 | 1 |
| Thermotoga sp. RQ2 | 3 | 1 |
| Thermotoga neapolitana DSM 4359 | 3 | 1 |
| Thermotoga petrophila RKU-1 | 3 | 1 |
| Thermotoga naphthophila RKU-10 | 3 | 1 |
| Thermotoga lettingae TMO | 3 | 1 |
| Thermosipho africanus TCF52B | 3 | 1 |
| Thermosipho melanesiensis BI429 | 3 | 1 |
| Fervidobacterium nodosum Rt17-B1 | 3 | 1 |
| Petrotoga mobilis SJ95 | 3 | 1 |
| Thermotogales bacterium TBF 19.5.1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| infC |
*
Thermotoga maritima MSB8 Site: position = -213 score = 45.97 sequence = AAAGCAAGTGGAGGC... Gene: TM1590: Translation initiation factor 3 |
*
Thermotoga sp. RQ2 Site: position = -213 score = 45.97 sequence = AAAGCAAGTGGAGGC... Gene: TRQ2_1253: Translation initiation factor 3 |
*
Thermotoga neapolitana DSM 4359 Site: position = -115 score = 44.17 sequence = TAAAAGCAAGTGGAG... Gene: CTN_0869: Translation initiation factor 3 |
*
Thermotoga petrophila RKU-1 Site: position = -197 score = 44.06 sequence = AAAAAGCAAGTGGAG... Gene: Tpet_1203: Translation initiation factor 3 |
*
Thermotoga naphthophila RKU-10 Site: position = -137 score = 45.97 sequence = AAAAAGCAAGTGGAG... Gene: Tnap_1218: Translation initiation factor 3 |
*
Thermotoga lettingae TMO Site: position = -84 score = 31.99 sequence = AGAGCAAGAGGAAGC... Gene: Tlet_1347: Translation initiation factor 3 |
*
Thermosipho africanus TCF52B Site: position = -233 score = 46.43 sequence = TATAGTAAAGAGGAA... Gene: THA_1200: Translation initiation factor 3 |
*
Thermosipho melanesiensis BI429 Site: position = -225 score = 38.4 sequence = TTTTGAAGAGGAAGC... Gene: Tmel_0923: Translation initiation factor 3 |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -172 score = 44.15 sequence = GTAAAAAGTGGAGGC... Gene: Fnod_0660: Translation initiation factor 3 |
*
Petrotoga mobilis SJ95 Site: position = -177 score = 27.84 sequence = AGGTAAAGAGGAAGT... Gene: Pmob_0709: Translation initiation factor 3 |
|
Translation initiation factor 3 |
| rpmI |
Gene: TM1591: LSU ribosomal protein L35p |
Gene: TRQ2_1254: LSU ribosomal protein L35p |
Gene: CTN_0868: LSU ribosomal protein L35p |
Gene: Tpet_1202: LSU ribosomal protein L35p |
Gene: Tnap_1217: LSU ribosomal protein L35p |
Gene: Tlet_1348: LSU ribosomal protein L35p |
Gene: THA_1199: LSU ribosomal protein L35p |
Gene: Tmel_0924: LSU ribosomal protein L35p |
Gene: Fnod_0661: LSU ribosomal protein L35p |
Gene: Pmob_0710: LSU ribosomal protein L35p |
|
LSU ribosomal protein L35p |
| rplT |
Gene: TM1592: LSU ribosomal protein L20p |
Gene: TRQ2_1255: LSU ribosomal protein L20p |
Gene: CTN_0867: LSU ribosomal protein L20p |
Gene: Tpet_1201: LSU ribosomal protein L20p |
Gene: Tnap_1216: LSU ribosomal protein L20p |
Gene: Tlet_1349: LSU ribosomal protein L20p |
Gene: THA_1198: LSU ribosomal protein L20p |
Gene: Tmel_0925: LSU ribosomal protein L20p |
Gene: Fnod_0662: LSU ribosomal protein L20p |
Gene: Pmob_0711: LSU ribosomal protein L20p |
|
LSU ribosomal protein L20p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |