Regulog L10_leader - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 2 | 1 |
| Thermotoga sp. RQ2 | 2 | 1 |
| Thermotoga neapolitana DSM 4359 | 2 | 1 |
| Thermotoga petrophila RKU-1 | 2 | 1 |
| Thermotoga naphthophila RKU-10 | 2 | 1 |
| Thermotoga lettingae TMO | 2 | 1 |
| Thermosipho africanus TCF52B | 2 | 1 |
| Thermosipho melanesiensis BI429 | 2 | 1 |
| Fervidobacterium nodosum Rt17-B1 | 2 | 1 |
| Petrotoga mobilis SJ95 | 2 | 1 |
| Thermotogales bacterium TBF 19.5.1 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| rplJ |
*
Thermotoga maritima MSB8 Site: position = -133 score = 36.7 sequence = GAAAACTCAATAAGA... Gene: TM0456: LSU ribosomal protein L10p (P0) |
*
Thermotoga sp. RQ2 Site: position = -136 score = 40.19 sequence = TCGAAAACTCAATAA... Gene: TRQ2_0479: LSU ribosomal protein L10p (P0) |
*
Thermotoga neapolitana DSM 4359 Site: position = -137 score = 32.35 sequence = AACAAATAGCCGAGC... Gene: CTN_0217: LSU ribosomal protein L10p (P0) |
*
Thermotoga petrophila RKU-1 Site: position = -136 score = 40.19 sequence = TCGAAAACTCAATAA... Gene: Tpet_0464: LSU ribosomal protein L10p (P0) |
*
Thermotoga naphthophila RKU-10 Site: position = -134 score = 40.19 sequence = GAAAACTCAATAAGA... Gene: Tnap_0238: LSU ribosomal protein L10p (P0) |
*
Thermotoga lettingae TMO Site: position = -115 score = 46.64 sequence = TGAATAATTGCTTTT... Gene: Tlet_0475: LSU ribosomal protein L10p (P0) |
*
Thermosipho africanus TCF52B Site: position = -142 score = 34.2 sequence = TGGTAAAATTTAGTC... Gene: THA_1347: LSU ribosomal protein L10p (P0) |
*
Thermosipho melanesiensis BI429 Site: position = -141 score = 33.93 sequence = TGTTAAAATCTAACC... Gene: Tmel_0504: LSU ribosomal protein L10p (P0) |
*
Fervidobacterium nodosum Rt17-B1 Site: position = -163 score = 25.14 sequence = TGGTATATCTCAATG... Gene: Fnod_1784: LSU ribosomal protein L10p (P0) |
*
Petrotoga mobilis SJ95 Site: position = -151 score = 42.46 sequence = AGTAATAACAGATTG... Gene: Pmob_0357: LSU ribosomal protein L10p (P0) |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -150 score = 41.16 sequence = AAGTGAAAGTGAATA... Gene: Kole_1840: LSU ribosomal protein L10p (P0) |
LSU ribosomal protein L10p (P0) |
| rplL |
Gene: TM0457: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: TRQ2_0478: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: CTN_0216: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Tpet_0463: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Tnap_0239: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Tlet_0476: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: THA_1346: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Tmel_0503: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Fnod_1783: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Pmob_0356: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: Kole_1839: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |