Regulog ykkC-yxkD - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | ykkC-yxkD |
| RFAM: | RF00442 |
| Regulation mode: | |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - ykkC-yxkD
- By pathway - Multidrug resistance
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 2 |
| Bacillus amyloliquefaciens FZB42 | 3 | 2 |
| Bacillus pumilus SAFR-032 | 2 | 1 |
| Bacillus licheniformis DSM 13 | 3 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | 2 | 1 |
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ykkC |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -188 score = 97.12 sequence = GTAAAGTTTTCTAGG... Gene: BSU13090: Quaternary ammonium compound-resistance protein sugE |
*
Bacillus amyloliquefaciens FZB42 Site: position = -174 score = 90.77 sequence = GACATGTTTTCTAGG... Gene: RBAM_012900: Quaternary ammonium compound-resistance protein sugE |
*
Bacillus pumilus SAFR-032 Site: position = -174 score = 84.17 sequence = AATTGGTTTTCTAGG... Gene: BPUM_1202: Quaternary ammonium compound-resistance protein sugE |
*
Bacillus licheniformis DSM 13 Site: position = -162 score = 94.71 sequence = TTAAAGTTTTCTAGG... Gene: BLi01409: Quaternary ammonium compound-resistance protein sugE |
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Gene: BC4213: Quaternary ammonium compound-resistance protein sugE |
*
Bacillus halodurans C-125 Site: position = -155 score = 94.79 sequence = GCCAAATGTTTTCTA... Gene: BH0686: Quaternary ammonium compound-resistance protein sugE |
*
Bacillus clausii KSM-K16 Site: position = -150 score = 80.94 sequence = GCACAAATGCGCCTA... Gene: ABC3844: Quaternary ammonium compound-resistance protein sugE |
*
Oceanobacillus iheyensis HTE831 Site: position = -209 score = 90.73 sequence = CGTAAATACTTTCTA... Gene: OB3264: Quaternary ammonium compound-resistance protein sugE |
*
Paenibacillus sp. JDR-2 Site: position = -180 score = 85.38 sequence = TAGTGGTTTTCTAGG... Gene: Pjdr2_5861: Quaternary ammonium compound-resistance protein sugE |
Quaternary ammonium compound-resistance protein sugE |
| ykkD |
Gene: BSU13100: Quaternary ammonium compound-resistance protein sugE |
Gene: RBAM_012910: Quaternary ammonium compound-resistance protein sugE |
Gene: BPUM_1203: Quaternary ammonium compound-resistance protein sugE |
Gene: BLi01410: Quaternary ammonium compound-resistance protein sugE |
|
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Gene: BC4214: Quaternary ammonium compound-resistance protein sugE |
Gene: BH0685: Quaternary ammonium compound-resistance protein sugE |
Gene: ABC3843: Quaternary ammonium compound-resistance protein sugE |
Gene: OB3263: Quaternary ammonium compound-resistance protein sugE |
Gene: Pjdr2_5862: Quaternary ammonium compound-resistance protein sugE |
Quaternary ammonium compound-resistance protein sugE |
| CRON 2. | ||||||||||||
| yxkD |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -180 score = 73.66 sequence = AACAGTGGTTTTCTA... Gene: BSU38840: Membrane protein, putative |
*
Bacillus amyloliquefaciens FZB42 Site: position = -168 score = 82.73 sequence = AACAGTGGTTTTCTA... Gene: RBAM_036060: Membrane protein, putative |
|
*
Bacillus licheniformis DSM 13 Site: position = -193 score = 84.66 sequence = AAAGGTGGTTTTCTA... Gene: BLi04161: Membrane protein, putative |
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Membrane protein, putative |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |