Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ykkC-yxkD - Bacillales

Properties
Regulator type: RNA regulatory element
Name: ykkC-yxkD
RFAM: RF00442
Regulation mode:
Biological process: Multidrug resistance
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 2
Bacillus pumilus SAFR-032 2 1
Bacillus licheniformis DSM 13 3 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125 2 1
Bacillus clausii KSM-K16 2 1
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykkC
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -188
score = 97.12
sequence = GTAAAGTTTTCTAGG...

Gene: BSU13090: Quaternary ammonium compound-resistance protein sugE
*
Bacillus amyloliquefaciens FZB42

Site:
position = -174
score = 90.77
sequence = GACATGTTTTCTAGG...

Gene: RBAM_012900: Quaternary ammonium compound-resistance protein sugE
*
Bacillus pumilus SAFR-032

Site:
position = -174
score = 84.17
sequence = AATTGGTTTTCTAGG...

Gene: BPUM_1202: Quaternary ammonium compound-resistance protein sugE
*
Bacillus licheniformis DSM 13

Site:
position = -162
score = 94.71
sequence = TTAAAGTTTTCTAGG...

Gene: BLi01409: Quaternary ammonium compound-resistance protein sugE
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC4213: Quaternary ammonium compound-resistance protein sugE
*
Bacillus halodurans C-125

Site:
position = -155
score = 94.79
sequence = GCCAAATGTTTTCTA...

Gene: BH0686: Quaternary ammonium compound-resistance protein sugE
*
Bacillus clausii KSM-K16

Site:
position = -150
score = 80.94
sequence = GCACAAATGCGCCTA...

Gene: ABC3844: Quaternary ammonium compound-resistance protein sugE
*
Oceanobacillus iheyensis HTE831

Site:
position = -209
score = 90.73
sequence = CGTAAATACTTTCTA...

Gene: OB3264: Quaternary ammonium compound-resistance protein sugE
*
Paenibacillus sp. JDR-2

Site:
position = -180
score = 85.38
sequence = TAGTGGTTTTCTAGG...

Gene: Pjdr2_5861: Quaternary ammonium compound-resistance protein sugE
Quaternary ammonium compound-resistance protein sugE
ykkD
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU13100: Quaternary ammonium compound-resistance protein sugE
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_012910: Quaternary ammonium compound-resistance protein sugE
 
Bacillus pumilus SAFR-032

Gene: BPUM_1203: Quaternary ammonium compound-resistance protein sugE
 
Bacillus licheniformis DSM 13

Gene: BLi01410: Quaternary ammonium compound-resistance protein sugE
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC4214: Quaternary ammonium compound-resistance protein sugE
 
Bacillus halodurans C-125

Gene: BH0685: Quaternary ammonium compound-resistance protein sugE
 
Bacillus clausii KSM-K16

Gene: ABC3843: Quaternary ammonium compound-resistance protein sugE
 
Oceanobacillus iheyensis HTE831

Gene: OB3263: Quaternary ammonium compound-resistance protein sugE
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5862: Quaternary ammonium compound-resistance protein sugE
Quaternary ammonium compound-resistance protein sugE
 
CRON 2.
yxkD
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -180
score = 73.66
sequence = AACAGTGGTTTTCTA...

Gene: BSU38840: Membrane protein, putative
*
Bacillus amyloliquefaciens FZB42

Site:
position = -168
score = 82.73
sequence = AACAGTGGTTTTCTA...

Gene: RBAM_036060: Membrane protein, putative
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -193
score = 84.66
sequence = AAAGGTGGTTTTCTA...

Gene: BLi04161: Membrane protein, putative
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Membrane protein, putative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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