Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ydaO-yuaA - Corynebacteriaceae

Properties
Regulator type: RNA regulatory element
Name: ydaO-yuaA
RFAM: RF00379
Regulation mode:
Biological process: Cell wall metabolism
Effector:
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium glutamicum ATCC 13032 2 2
Corynebacterium efficiens YS-314 2 2
Corynebacterium diphtheriae NCTC 13129
Corynebacterium aurimucosum ATCC 700975
Corynebacterium jeikeium K411
Corynebacterium urealyticum DSM 7109
Corynebacterium amycolatum SK46 1 1
Corynebacterium kroppenstedtii DSM 44385
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0791
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -202
score = 59.37
sequence = AAACAAATAGACGCT...

Gene: cg2402: Cell wall-associated hydrolase, COG0791
*
Corynebacterium efficiens YS-314

Site:
position = -217
score = 62.35
sequence = ACAATAGAAAATGTC...

Gene: CE2081: Cell wall-associated hydrolase, COG0791
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP1622: Cell wall-associated hydrolase, COG0791
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_1695: Cell wall-associated hydrolase, COG0791
 
Corynebacterium jeikeium K411

Gene: jk0725: Cell wall-associated hydrolase, COG0791
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1231: Cell wall-associated hydrolase, COG0791
*
Corynebacterium amycolatum SK46

Site:
position = -194
score = 71.18
sequence = AGAAAACACAGAGCC...

Gene: CORAM0001_1133: Cell wall-associated hydrolase, COG0791
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0716: Cell wall-associated hydrolase, COG0791
Cell wall-associated hydrolase, COG0791
 
CRON 2.
rpfA
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -176
score = 69.93
sequence = GCATTCATGTGGGCC...

Gene: cg0936: Resuscitation-promoting factor RpfA
*
Corynebacterium efficiens YS-314

Site:
position = -174
score = 69.31
sequence = CAAACCACACACGCT...

Gene: CE0894: Resuscitation-promoting factor RpfA
 
Corynebacterium diphtheriae NCTC 13129

Gene: DIP0775: Resuscitation-promoting factor RpfA
 
Corynebacterium aurimucosum ATCC 700975

Gene: cauri_0758: Resuscitation-promoting factor RpfA
 
Corynebacterium jeikeium K411

Gene: jk0416: Resuscitation-promoting factor RpfA
 
Corynebacterium urealyticum DSM 7109

Gene: cur_1567: Resuscitation-promoting factor RpfA
 
Corynebacterium amycolatum SK46

Gene: CORAM0001_1607: Resuscitation-promoting factor RpfA
 
Corynebacterium kroppenstedtii DSM 44385

Gene: ckrop_0433: Resuscitation-promoting factor RpfA
Resuscitation-promoting factor RpfA
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD