Regulog ydaO-yuaA - Corynebacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | ydaO-yuaA |
| RFAM: | RF00379 |
| Regulation mode: | |
| Biological process: | Cell wall metabolism |
| Effector: | |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By RNA motif - ydaO-yuaA
- By pathway - Cell wall metabolism
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium glutamicum ATCC 13032 | 2 | 2 |
| Corynebacterium efficiens YS-314 | 2 | 2 |
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium jeikeium K411 | ||
| Corynebacterium urealyticum DSM 7109 | ||
| Corynebacterium amycolatum SK46 | 1 | 1 |
| Corynebacterium kroppenstedtii DSM 44385 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| COG0791 |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -202 score = 59.37 sequence = AAACAAATAGACGCT... Gene: cg2402: Cell wall-associated hydrolase, COG0791 |
*
Corynebacterium efficiens YS-314 Site: position = -217 score = 62.35 sequence = ACAATAGAAAATGTC... Gene: CE2081: Cell wall-associated hydrolase, COG0791 |
Gene: DIP1622: Cell wall-associated hydrolase, COG0791 |
Gene: cauri_1695: Cell wall-associated hydrolase, COG0791 |
Gene: jk0725: Cell wall-associated hydrolase, COG0791 |
Gene: cur_1231: Cell wall-associated hydrolase, COG0791 |
*
Corynebacterium amycolatum SK46 Site: position = -194 score = 71.18 sequence = AGAAAACACAGAGCC... Gene: CORAM0001_1133: Cell wall-associated hydrolase, COG0791 |
Gene: ckrop_0716: Cell wall-associated hydrolase, COG0791 |
Cell wall-associated hydrolase, COG0791 |
| CRON 2. | |||||||||
| rpfA |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -176 score = 69.93 sequence = GCATTCATGTGGGCC... Gene: cg0936: Resuscitation-promoting factor RpfA |
*
Corynebacterium efficiens YS-314 Site: position = -174 score = 69.31 sequence = CAAACCACACACGCT... Gene: CE0894: Resuscitation-promoting factor RpfA |
Gene: DIP0775: Resuscitation-promoting factor RpfA |
Gene: cauri_0758: Resuscitation-promoting factor RpfA |
Gene: jk0416: Resuscitation-promoting factor RpfA |
Gene: cur_1567: Resuscitation-promoting factor RpfA |
Gene: CORAM0001_1607: Resuscitation-promoting factor RpfA |
Gene: ckrop_0433: Resuscitation-promoting factor RpfA |
Resuscitation-promoting factor RpfA |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |