Regulog ydaO-yuaA - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | ydaO-yuaA |
| RFAM: | RF00379 |
| Regulation mode: | |
| Biological process: | Cell wall metabolism; Osmotic stress response |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - ydaO-yuaA
- By pathway - Cell wall metabolism
- By pathway - Osmotic stress response
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 2 |
| Bacillus amyloliquefaciens FZB42 | 1 | 1 |
| Bacillus pumilus SAFR-032 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | 6 | 2 |
| Bacillus cereus ATCC 14579 | 5 | 2 |
| Bacillus halodurans C-125 | 2 | 1 |
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 | 11 | 5 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ydaO |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -339 score = 103.53 sequence = AAAACAAATCGCTTA... Gene: BSU04320: Putative metabolite transporter, COG0531 |
*
Bacillus amyloliquefaciens FZB42 Site: position = -299 score = 102.7 sequence = AATCTATATCGCTTA... Gene: RBAM_004540: Putative metabolite transporter, COG0531 |
*
Bacillus pumilus SAFR-032 Site: position = -257 score = 103.81 sequence = AAGACCAATCGCTGA... Gene: BPUM_0406: Putative metabolite transporter, COG0531 |
*
Bacillus licheniformis DSM 13 Site: position = -239 score = 102.88 sequence = ATCCAAAATCGCTTA... Gene: BLi00519: Putative metabolite transporter, COG0531 |
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*
Geobacillus kaustophilus HTA426 Site: position = -233 score = 93.48 sequence = AATATTTAGCGCTGA... Gene: GK0213: Putative metabolite transporter, COG0531 |
*
Bacillus cereus ATCC 14579 Site: position = -290 score = 102.36 sequence = TTTCTAAATCGCTGA... Gene: BC1807: Putative metabolite transporter, COG0531 |
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*
Paenibacillus sp. JDR-2 Site: position = -340 score = 81.36 sequence = GTTCATATTCGCTGA... Gene: Pjdr2_0318: Putative metabolite transporter, COG0531 |
Putative metabolite transporter, COG0531 |
| CRON 2. | ||||||||||||
| Pjdr2_5988 |
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*
Paenibacillus sp. JDR-2 Site: position = -306 score = 81.88 sequence = TGTCTTTATCGCTTA... Gene: Pjdr2_5988: Hypothetical protein |
Hypothetical protein |
| GK3249 |
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*
Geobacillus kaustophilus HTA426 Site: position = -349 score = 100.86 sequence = TCCCTAAAGATCGCT... Gene: GK3249: Hypothetical protein |
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Gene: Pjdr2_5989: Hypothetical protein |
Hypothetical protein |
| kdpA |
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Gene: GK3248: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
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Bacillus cereus ATCC 14579 Site: position = -442 score = 113.47 sequence = ACCTAAAATCGCTGA... Gene: BC0753: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
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Gene: Pjdr2_5990: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| kdpB |
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Gene: GK3247: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
Gene: BC0754: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
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Gene: Pjdr2_5991: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| kdpC |
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Gene: GK3246: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
Gene: BC0755: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
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Gene: Pjdr2_5992: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) |
| kdpD |
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Gene: GK3245: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) |
Gene: BC0756: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) |
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Gene: Pjdr2_5993: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) |
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) |
| CRON 3. | ||||||||||||
| COG1301 |
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*
Bacillus pumilus SAFR-032 Site: position = -210 score = 100.09 sequence = ATAACCACACGCTTA... Gene: BPUM_0421: Sodium:dicarboxylate symporter family protein, COG1301 |
*
Bacillus licheniformis DSM 13 Site: position = -215 score = 83.81 sequence = AGCGCCACACGTTTA... Gene: BLi00536: Sodium:dicarboxylate symporter family protein, COG1301 |
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Sodium:dicarboxylate symporter family protein, COG1301 |
| CRON 4. | ||||||||||||
| kamA |
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Gene: BH2943: Lysine 2,3-aminomutase (EC 5.4.3.2) |
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*
Paenibacillus sp. JDR-2 Site: position = -323 score = 85.33 sequence = TAATTACAATAAGCT... Gene: Pjdr2_5396: Lysine 2,3-aminomutase (EC 5.4.3.2) |
Lysine 2,3-aminomutase (EC 5.4.3.2) |
| CRON 5. | ||||||||||||
| COG0791 |
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Paenibacillus sp. JDR-2 Site: position = -163 score = 67.76 sequence = ATAAAACAAACTGCC... Gene: Pjdr2_0116: Cell wall-associated hydrolase, COG0791 |
Cell wall-associated hydrolase, COG0791 |
| CRON 6. | ||||||||||||
| ktrA |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -220 score = 87.71 sequence = CTCTTTTACCGCTTA... Gene: BSU31090: Potassium uptake protein, integral membrane component, KtrA |
Gene: RBAM_028190: Potassium uptake protein, integral membrane component, KtrA |
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Gene: BLi03264: Potassium uptake protein, integral membrane component, KtrA |
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*2
Bacillus halodurans C-125 Site: position = -223 score = 103.1 sequence = ACCTTTAATCGCTGA... Gene: BH0597: Potassium uptake protein, integral membrane component, KtrA Gene: BH0467: Potassium uptake protein, integral membrane component, KtrA |
Gene: ABC0285: Potassium uptake protein, integral membrane component, KtrA |
*
Oceanobacillus iheyensis HTE831 Site: position = -216 score = 94.36 sequence = CTTTTTAGTCGCTGA... Gene: OB1662: Potassium uptake protein, integral membrane component, KtrA |
Gene: Pjdr2_4813: Potassium uptake protein, integral membrane component, KtrA |
Potassium uptake protein, integral membrane component, KtrA |
| ktrB |
Gene: BSU31100: Potassium uptake protein, integral membrane component, KtrB |
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Gene: BLi04001: Potassium uptake protein, integral membrane component, KtrB |
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Gene: BH0598: Potassium uptake protein, integral membrane component, KtrB |
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2
Oceanobacillus iheyensis HTE831 Gene: OB1663: Potassium uptake protein, integral membrane component, KtrB Gene: OB1664: Potassium uptake protein, integral membrane component, KtrB |
*
Paenibacillus sp. JDR-2 Site: position = -233 score = 83.16 sequence = CGAATCGTATCAGCC... Gene: Pjdr2_4814: Potassium uptake protein, integral membrane component, KtrB |
Potassium uptake protein, integral membrane component, KtrB |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |