Regulog ydaO-yuaA - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	ydaO-yuaA
RFAM:	RF00379
Regulation mode:
Biological process:	Cell wall metabolism; Osmotic stress response
Effector:
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - ydaO-yuaA
By pathway - Cell wall metabolism
By pathway - Osmotic stress response

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	2
Bacillus amyloliquefaciens FZB42	1	1
Bacillus pumilus SAFR-032	2	2
Bacillus licheniformis DSM 13	2	2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426	6	2
Bacillus cereus ATCC 14579	5	2
Bacillus halodurans C-125	2	1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831	3	1
Paenibacillus sp. JDR-2	11	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ydaO	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -339 score = 103.53 sequence = AAAACAAATCGCTTA... Gene: BSU04320: Putative metabolite transporter, COG0531	* Bacillus amyloliquefaciens FZB42 Site: position = -299 score = 102.7 sequence = AATCTATATCGCTTA... Gene: RBAM_004540: Putative metabolite transporter, COG0531	* Bacillus pumilus SAFR-032 Site: position = -257 score = 103.81 sequence = AAGACCAATCGCTGA... Gene: BPUM_0406: Putative metabolite transporter, COG0531	* Bacillus licheniformis DSM 13 Site: position = -239 score = 102.88 sequence = ATCCAAAATCGCTTA... Gene: BLi00519: Putative metabolite transporter, COG0531	Anoxybacillus flavithermus WK1	* Geobacillus kaustophilus HTA426 Site: position = -233 score = 93.48 sequence = AATATTTAGCGCTGA... Gene: GK0213: Putative metabolite transporter, COG0531	* Bacillus cereus ATCC 14579 Site: position = -290 score = 102.36 sequence = TTTCTAAATCGCTGA... Gene: BC1807: Putative metabolite transporter, COG0531	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -340 score = 81.36 sequence = GTTCATATTCGCTGA... Gene: Pjdr2_0318: Putative metabolite transporter, COG0531	Putative metabolite transporter, COG0531

CRON 2.
Pjdr2_5988	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -306 score = 81.88 sequence = TGTCTTTATCGCTTA... Gene: Pjdr2_5988: Hypothetical protein	Hypothetical protein
GK3249	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	* Geobacillus kaustophilus HTA426 Site: position = -349 score = 100.86 sequence = TCCCTAAAGATCGCT... Gene: GK3249: Hypothetical protein	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5989: Hypothetical protein	Hypothetical protein
kdpA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK3248: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	* Bacillus cereus ATCC 14579 Site: position = -442 score = 113.47 sequence = ACCTAAAATCGCTGA... Gene: BC0753: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5990: Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpB	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK3247: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Bacillus cereus ATCC 14579 Gene: BC0754: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5991: Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpC	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK3246: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Bacillus cereus ATCC 14579 Gene: BC0755: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5992: Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)	Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1)
kdpD	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK3245: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Bacillus cereus ATCC 14579 Gene: BC0756: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_5993: Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)	Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)

CRON 3.
COG1301	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	* Bacillus pumilus SAFR-032 Site: position = -210 score = 100.09 sequence = ATAACCACACGCTTA... Gene: BPUM_0421: Sodium:dicarboxylate symporter family protein, COG1301	* Bacillus licheniformis DSM 13 Site: position = -215 score = 83.81 sequence = AGCGCCACACGTTTA... Gene: BLi00536: Sodium:dicarboxylate symporter family protein, COG1301	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Sodium:dicarboxylate symporter family protein, COG1301

CRON 4.
kamA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH2943: Lysine 2,3-aminomutase (EC 5.4.3.2)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -323 score = 85.33 sequence = TAATTACAATAAGCT... Gene: Pjdr2_5396: Lysine 2,3-aminomutase (EC 5.4.3.2)	Lysine 2,3-aminomutase (EC 5.4.3.2)

CRON 5.
COG0791	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -163 score = 67.76 sequence = ATAAAACAAACTGCC... Gene: Pjdr2_0116: Cell wall-associated hydrolase, COG0791	Cell wall-associated hydrolase, COG0791

CRON 6.
ktrA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -220 score = 87.71 sequence = CTCTTTTACCGCTTA... Gene: BSU31090: Potassium uptake protein, integral membrane component, KtrA	Bacillus amyloliquefaciens FZB42 Gene: RBAM_028190: Potassium uptake protein, integral membrane component, KtrA	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi03264: Potassium uptake protein, integral membrane component, KtrA	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	2 Bacillus halodurans C-125* Site: position = -223 score = 103.1 sequence = ACCTTTAATCGCTGA... Gene: BH0597: Potassium uptake protein, integral membrane component, KtrA Gene: BH0467: Potassium uptake protein, integral membrane component, KtrA	Bacillus clausii KSM-K16 Gene: ABC0285: Potassium uptake protein, integral membrane component, KtrA	* Oceanobacillus iheyensis HTE831 Site: position = -216 score = 94.36 sequence = CTTTTTAGTCGCTGA... Gene: OB1662: Potassium uptake protein, integral membrane component, KtrA	Paenibacillus sp. JDR-2 Gene: Pjdr2_4813: Potassium uptake protein, integral membrane component, KtrA	Potassium uptake protein, integral membrane component, KtrA
ktrB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU31100: Potassium uptake protein, integral membrane component, KtrB	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13 Gene: BLi04001: Potassium uptake protein, integral membrane component, KtrB	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0598: Potassium uptake protein, integral membrane component, KtrB	Bacillus clausii KSM-K16	2 Oceanobacillus iheyensis HTE831 Gene: OB1663: Potassium uptake protein, integral membrane component, KtrB Gene: OB1664: Potassium uptake protein, integral membrane component, KtrB	* Paenibacillus sp. JDR-2 Site: position = -233 score = 83.16 sequence = CGAATCGTATCAGCC... Gene: Pjdr2_4814: Potassium uptake protein, integral membrane component, KtrB	Potassium uptake protein, integral membrane component, KtrB

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ydaO-yuaA - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --