Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog yybP-ykoY - Corynebacteriaceae

Properties
Regulator type: RNA regulatory element
Name: yybP-ykoY
RFAM: RF00080
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Corynebacterium glutamicum ATCC 13032 4 3
Corynebacterium efficiens YS-314 1 1
Corynebacterium diphtheriae NCTC 13129 1 1
Corynebacterium aurimucosum ATCC 700975 1 1
Corynebacterium jeikeium K411 1 1
Corynebacterium urealyticum DSM 7109 1 1
Corynebacterium amycolatum SK46 1 1
Corynebacterium kroppenstedtii DSM 44385 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ykoY
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -204
score = 47.6
sequence = TTCCCGTATTGGAGG...

Gene: cg2157: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium efficiens YS-314

Site:
position = -178
score = 52.57
sequence = CTTTCGTAATGGAGG...

Gene: CE1859: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium diphtheriae NCTC 13129

Site:
position = -195
score = 49.92
sequence = GACTGTAGTTGGAGG...

Gene: DIP1460: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium aurimucosum ATCC 700975

Site:
position = -163
score = 53.27
sequence = GACGAGTCTTGGAGG...

Gene: cauri_1511: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium jeikeium K411

Site:
position = -186
score = 49.65
sequence = GTCGGCAGTTGGAGG...

Gene: jk1125: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium urealyticum DSM 7109

Site:
position = -178
score = 48.23
sequence = CACTTGATGGAGGGG...

Gene: cur_0865: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium amycolatum SK46

Site:
position = -164
score = 48.9
sequence = CGGCACACGTGGAGG...

Gene: CORAM0001_0829: Membrane protein TerC, possibly involved in tellurium resistance
*
Corynebacterium kroppenstedtii DSM 44385

Site:
position = -258
score = 37.72
sequence = TCTAGTAGCTGGAGG...

Gene: ckrop_1121: Membrane protein TerC, possibly involved in tellurium resistance
Membrane protein TerC, possibly involved in tellurium resistance
 
CRON 2.
COG1971
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -216
score = 44.96
sequence = TCCATTTCGAAGGGG...

Gene: cg1660: Putative membrane protein
 
Corynebacterium efficiens YS-314

Gene: CE1598: Putative membrane protein
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Putative membrane protein
 
CRON 3.
COG0530
*
Corynebacterium glutamicum ATCC 13032

Site:
position = -138
score = 53.01
sequence = GTCTGTTGCTGAAGG...

Gene: cg2785: Sodium/calcium exchanger family membrane protein, COG0530
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Sodium/calcium exchanger family membrane protein, COG0530
COG1321
 
Corynebacterium glutamicum ATCC 13032

Gene: cg2784: Transcriptional regulator, COG1321
 
Corynebacterium efficiens YS-314
 
Corynebacterium diphtheriae NCTC 13129
 
Corynebacterium aurimucosum ATCC 700975
 
Corynebacterium jeikeium K411
 
Corynebacterium urealyticum DSM 7109
 
Corynebacterium amycolatum SK46
 
Corynebacterium kroppenstedtii DSM 44385
Transcriptional regulator, COG1321
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD