Regulog PyrR - Corynebacteriaceae

Properties
Regulator type:	RNA regulatory element
Name:	PyrR
RFAM:	RF00515
Regulation mode:
Biological process:	Pyrimidine metabolism
Effector:	PyrR
Phylum:	Actinobacteria

Member of regulog collections

By taxonomy - Corynebacteriaceae
By RNA motif - PyrR
By effector - PyrR
By pathway - Pyrimidine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium glutamicum ATCC 13032	6	1
Corynebacterium efficiens YS-314	6	1
Corynebacterium diphtheriae NCTC 13129	6	1
Corynebacterium aurimucosum ATCC 700975	6	1
Corynebacterium jeikeium K411	6	1
Corynebacterium urealyticum DSM 7109
Corynebacterium amycolatum SK46
Corynebacterium kroppenstedtii DSM 44385	6	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
pyrR	* Corynebacterium glutamicum ATCC 13032 Site: position = 11 score = 20.92 sequence = GACATCCTTTAACGG... Gene: cg1817: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Corynebacterium efficiens YS-314 Site: position = -46 score = 19.2 sequence = GACATCCTTTAACGG... Gene: CE1733: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Corynebacterium diphtheriae NCTC 13129 Site: position = -46 score = 23.57 sequence = GGCATCCTTTAACAG... Gene: DIP1335: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Corynebacterium aurimucosum ATCC 700975 Site: position = -43 score = 20.5 sequence = CATCCTTTAAAGACC... Gene: cauri_1175: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Corynebacterium jeikeium K411 Site: position = -46 score = 20.3 sequence = GACATCCTTTAACGG... Gene: jk1026: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	Corynebacterium urealyticum DSM 7109 Gene: cur_0965: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	Corynebacterium amycolatum SK46 Gene: CORAM0001_2150: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	* Corynebacterium kroppenstedtii DSM 44385 Site: position = -46 score = 18.62 sequence = GACATCCTTTAACGG... Gene: ckrop_0993: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR	Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
pyrB	Corynebacterium glutamicum ATCC 13032 Gene: cg1816: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium efficiens YS-314 Gene: CE1732: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1334: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1176: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium jeikeium K411 Gene: jk1025: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium urealyticum DSM 7109 Gene: cur_0966: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium amycolatum SK46 Gene: CORAM0001_2151: Aspartate carbamoyltransferase (EC 2.1.3.2)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_3001: Aspartate carbamoyltransferase (EC 2.1.3.2)	Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC	Corynebacterium glutamicum ATCC 13032 Gene: cg1815: Dihydroorotase (EC 3.5.2.3)	Corynebacterium efficiens YS-314 Gene: CE1731: Dihydroorotase (EC 3.5.2.3)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1333: Dihydroorotase (EC 3.5.2.3)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1177: Dihydroorotase (EC 3.5.2.3)	Corynebacterium jeikeium K411 Gene: jk1024: Dihydroorotase (EC 3.5.2.3)	Corynebacterium urealyticum DSM 7109 Gene: cur_0967: Dihydroorotase (EC 3.5.2.3)	Corynebacterium amycolatum SK46 Gene: CORAM0001_2152: Dihydroorotase (EC 3.5.2.3)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0992: Dihydroorotase (EC 3.5.2.3)	Dihydroorotase (EC 3.5.2.3)
carA	Corynebacterium glutamicum ATCC 13032 Gene: cg1814: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium efficiens YS-314 Gene: CE1730: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1332: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1178: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium jeikeium K411 Gene: jk1023: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium urealyticum DSM 7109 Gene: cur_0968: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium amycolatum SK46 Gene: CORAM0001_2153: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0991: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB	Corynebacterium glutamicum ATCC 13032 Gene: cg1813: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium efficiens YS-314 Gene: CE1729: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1331: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1179: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium jeikeium K411 Gene: jk1022: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium urealyticum DSM 7109 Gene: cur_0969: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium amycolatum SK46 Gene: CORAM0001_2154: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0990: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrF	Corynebacterium glutamicum ATCC 13032 Gene: cg1812: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium efficiens YS-314 Gene: CE1728: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium diphtheriae NCTC 13129 Gene: DIP1330: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_1180: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium jeikeium K411 Gene: jk1021: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium urealyticum DSM 7109 Gene: cur_0970: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium amycolatum SK46 Gene: CORAM0001_2155: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Corynebacterium kroppenstedtii DSM 44385 Gene: ckrop_0989: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)	Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PyrR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --