Regulog PyrR - Corynebacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | PyrR |
| RFAM: | RF00515 |
| Regulation mode: | |
| Biological process: | Pyrimidine metabolism |
| Effector: | PyrR |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By RNA motif - PyrR
- By effector - PyrR
- By pathway - Pyrimidine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium glutamicum ATCC 13032 | 6 | 1 |
| Corynebacterium efficiens YS-314 | 6 | 1 |
| Corynebacterium diphtheriae NCTC 13129 | 6 | 1 |
| Corynebacterium aurimucosum ATCC 700975 | 6 | 1 |
| Corynebacterium jeikeium K411 | 6 | 1 |
| Corynebacterium urealyticum DSM 7109 | ||
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium kroppenstedtii DSM 44385 | 6 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| pyrR |
*
Corynebacterium glutamicum ATCC 13032 Site: position = 11 score = 20.92 sequence = GACATCCTTTAACGG... Gene: cg1817: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Corynebacterium efficiens YS-314 Site: position = -46 score = 19.2 sequence = GACATCCTTTAACGG... Gene: CE1733: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Corynebacterium diphtheriae NCTC 13129 Site: position = -46 score = 23.57 sequence = GGCATCCTTTAACAG... Gene: DIP1335: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Corynebacterium aurimucosum ATCC 700975 Site: position = -43 score = 20.5 sequence = CATCCTTTAAAGACC... Gene: cauri_1175: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Corynebacterium jeikeium K411 Site: position = -46 score = 20.3 sequence = GACATCCTTTAACGG... Gene: jk1026: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: cur_0965: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Gene: CORAM0001_2150: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
*
Corynebacterium kroppenstedtii DSM 44385 Site: position = -46 score = 18.62 sequence = GACATCCTTTAACGG... Gene: ckrop_0993: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR |
| pyrB |
Gene: cg1816: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CE1732: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: DIP1334: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: cauri_1176: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: jk1025: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: cur_0966: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: CORAM0001_2151: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Gene: ckrop_3001: Aspartate carbamoyltransferase (EC 2.1.3.2) |
Aspartate carbamoyltransferase (EC 2.1.3.2) |
| pyrC |
Gene: cg1815: Dihydroorotase (EC 3.5.2.3) |
Gene: CE1731: Dihydroorotase (EC 3.5.2.3) |
Gene: DIP1333: Dihydroorotase (EC 3.5.2.3) |
Gene: cauri_1177: Dihydroorotase (EC 3.5.2.3) |
Gene: jk1024: Dihydroorotase (EC 3.5.2.3) |
Gene: cur_0967: Dihydroorotase (EC 3.5.2.3) |
Gene: CORAM0001_2152: Dihydroorotase (EC 3.5.2.3) |
Gene: ckrop_0992: Dihydroorotase (EC 3.5.2.3) |
Dihydroorotase (EC 3.5.2.3) |
| carA |
Gene: cg1814: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CE1730: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: DIP1332: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: cauri_1178: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: jk1023: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: cur_0968: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: CORAM0001_2153: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Gene: ckrop_0991: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: cg1813: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CE1729: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: DIP1331: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: cauri_1179: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: jk1022: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: cur_0969: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: CORAM0001_2154: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: ckrop_0990: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| pyrF |
Gene: cg1812: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CE1728: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: DIP1330: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: cauri_1180: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: jk1021: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: cur_0970: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: CORAM0001_2155: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Gene: ckrop_0989: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |