Regulog SAH_riboswitch - Ralstonia
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Ralstonia
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 3 | 1 |
| Ralstonia pickettii 12J | 3 | 1 |
| Ralstonia metallidurans CH34 | 3 | 1 |
| Ralstonia eutropha JMP134 | 3 | 1 |
| Ralstonia eutropha H16 | 3 | 1 |
| Cupriavidus taiwanensis | 3 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| ahcY |
*
Ralstonia solanacearum GMI1000 Site: position = -200 score = 59.4 sequence = CCATTCCGAGGAGCG... Gene: RSc0093: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Ralstonia pickettii 12J Site: position = -191 score = 55.53 sequence = ATTCCGAGGAGCGTT... Gene: Rpic_3656: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Ralstonia metallidurans CH34 Site: position = -211 score = 64.29 sequence = ACTCCGAGGAGCGTT... Gene: Rmet_0170: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Ralstonia eutropha JMP134 Site: position = -202 score = 61.1 sequence = ACTCCGAGGAGCGTT... Gene: Reut_A0213: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Ralstonia eutropha H16 Site: position = -237 score = 51.95 sequence = ACTCCGAGGAGCGTT... Gene: H16_A0244: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Cupriavidus taiwanensis Site: position = -211 score = 61.17 sequence = ACTCCGAGGAGCGTT... Gene: RALTA_A0188: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| PF04020 |
Gene: RS02279: Predicted membrane protein |
Gene: Rpic_3657: Predicted membrane protein |
Gene: Rmet_0171: Predicted membrane protein |
Gene: Reut_A0214: Predicted membrane protein |
Gene: H16_A0245: Predicted membrane protein |
Gene: RALTA_A0189: Predicted membrane protein |
Predicted membrane protein |
| metF |
Gene: RSc0091: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Rpic_3658: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Rmet_0172: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Reut_A0215: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: H16_A0246: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: RALTA_A0190: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |