Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAH_riboswitch - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: SAH_riboswitch
RFAM: RF01057
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylhomocysteine
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 3 1
Ralstonia pickettii 12J 3 1
Ralstonia metallidurans CH34 3 1
Ralstonia eutropha JMP134 3 1
Ralstonia eutropha H16 3 1
Cupriavidus taiwanensis 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ahcY
*
Ralstonia solanacearum GMI1000

Site:
position = -200
score = 59.4
sequence = CCATTCCGAGGAGCG...

Gene: RSc0093: Adenosylhomocysteinase (EC 3.3.1.1)
*
Ralstonia pickettii 12J

Site:
position = -191
score = 55.53
sequence = ATTCCGAGGAGCGTT...

Gene: Rpic_3656: Adenosylhomocysteinase (EC 3.3.1.1)
*
Ralstonia metallidurans CH34

Site:
position = -211
score = 64.29
sequence = ACTCCGAGGAGCGTT...

Gene: Rmet_0170: Adenosylhomocysteinase (EC 3.3.1.1)
*
Ralstonia eutropha JMP134

Site:
position = -202
score = 61.1
sequence = ACTCCGAGGAGCGTT...

Gene: Reut_A0213: Adenosylhomocysteinase (EC 3.3.1.1)
*
Ralstonia eutropha H16

Site:
position = -237
score = 51.95
sequence = ACTCCGAGGAGCGTT...

Gene: H16_A0244: Adenosylhomocysteinase (EC 3.3.1.1)
*
Cupriavidus taiwanensis

Site:
position = -211
score = 61.17
sequence = ACTCCGAGGAGCGTT...

Gene: RALTA_A0188: Adenosylhomocysteinase (EC 3.3.1.1)
Adenosylhomocysteinase (EC 3.3.1.1)
PF04020
 
Ralstonia solanacearum GMI1000

Gene: RS02279: Predicted membrane protein
 
Ralstonia pickettii 12J

Gene: Rpic_3657: Predicted membrane protein
 
Ralstonia metallidurans CH34

Gene: Rmet_0171: Predicted membrane protein
 
Ralstonia eutropha JMP134

Gene: Reut_A0214: Predicted membrane protein
 
Ralstonia eutropha H16

Gene: H16_A0245: Predicted membrane protein
 
Cupriavidus taiwanensis

Gene: RALTA_A0189: Predicted membrane protein
Predicted membrane protein
metF
 
Ralstonia solanacearum GMI1000

Gene: RSc0091: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Ralstonia pickettii 12J

Gene: Rpic_3658: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Ralstonia metallidurans CH34

Gene: Rmet_0172: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Ralstonia eutropha JMP134

Gene: Reut_A0215: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Ralstonia eutropha H16

Gene: H16_A0246: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Cupriavidus taiwanensis

Gene: RALTA_A0190: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise