Regulog Purine - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Purine |
| RFAM: | RF00167 |
| Regulation mode: | |
| Biological process: | Purine metabolism |
| Effector: | Adenine; Guanine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Purine
- By effector - Adenine
- By effector - Guanine
- By pathway - Purine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | ||
| Shewanella loihica PV-4 | ||
| Shewanella pealeana ATCC 700345 | 2 | 2 |
| Shewanella halifaxensis HAW-EB4 | 2 | 2 |
| Shewanella piezotolerans WP3 | 1 | 1 |
| Shewanella sediminis HAW-EB3 | 1 | 1 |
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| add |
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Shewanella pealeana ATCC 700345 Site: position = -193 score = 71.28 sequence = AATATTTACCGTTAA... Gene: Spea_3392: Adenosine deaminase (EC 3.5.4.4) |
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Shewanella halifaxensis HAW-EB4 Site: position = -189 score = 72.85 sequence = AAAATTAGCGGTTAA... Gene: Shal_3477: Adenosine deaminase (EC 3.5.4.4) |
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Shewanella piezotolerans WP3 Site: position = -125 score = 67.52 sequence = AATTCGCATCCGCTA... Gene: swp_4887: Adenosine deaminase (EC 3.5.4.4) |
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Shewanella sediminis HAW-EB3 Site: position = -197 score = 65.75 sequence = CCTAGCCCCTCGAAT... Gene: Ssed_3524: Adenosine deaminase (EC 3.5.4.4) |
*
Shewanella woodyi ATCC 51908 Site: position = -241 score = 71.74 sequence = CCTCCACAAAACTTA... Gene: Swoo_1121: Adenosine deaminase (EC 3.5.4.4) |
Adenosine deaminase (EC 3.5.4.4) |
| CRON 2. | |||||||||||||||||
| pbuG |
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Shewanella pealeana ATCC 700345 Site: position = -203 score = 53.76 sequence = GCGCCAACAATTTAT... Gene: Spea_3662: Guanine/hypoxanthine permease PbuG |
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Shewanella halifaxensis HAW-EB4 Site: position = -240 score = 53.76 sequence = GCGCCAACAATTTAT... Gene: Shal_3750: Guanine/hypoxanthine permease PbuG |
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Guanine/hypoxanthine permease PbuG |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |