Regulog AgaR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - AgaR
- By taxonomy - Xanthomonadales
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Xylella fastidiosa 9a5c | ||
| Xanthomonas axonopodis pv. citri str. 306 | ||
| Xanthomonas campestris pv. campestris str. ATCC 33913 | ||
| Stenotrophomonas maltophilia K279a | 9 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| agaS |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -64 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: Smlt4434: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaK |
|
|
|
Gene: Smlt4435: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157) |
| agaZ |
|
|
|
Gene: Smlt4436: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
Tagatose-6-phosphate kinase (EC 2.7.1.144) |
| agaR |
|
|
|
Gene: Smlt4437: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
| agaA |
|
|
|
Gene: Smlt4438: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| agaP-III |
|
|
|
Gene: Smlt4439: Predicted N-acetylgalactosamine permease, sugar transporter family |
Predicted N-acetylgalactosamine permease, sugar transporter family |
| CRON 2. | |||||
| agaH-III |
|
|
|
*
Stenotrophomonas maltophilia K279a Site: position = -313 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: Smlt4433: Predicted secreted glycosyl hydrolase, GH31 family |
Predicted secreted glycosyl hydrolase, GH31 family |
| omp_aga |
|
|
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Gene: Smlt4432: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane |
| agaO |
|
|
|
Gene: Smlt4431: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |