Regulog AgaR - Xanthomonadales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum:	Proteobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By trascription factor - AgaR
By taxonomy - Xanthomonadales
By TF family - DeoR
By effector - N-acetylgalactosamine-6-phosphate
By effector - Galactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Xylella fastidiosa 9a5c
Xanthomonas axonopodis pv. citri str. 306
Xanthomonas campestris pv. campestris str. ATCC 33913
Stenotrophomonas maltophilia K279a	9	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes					Function

CRON 1.
agaS	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	* Stenotrophomonas maltophilia K279a Site: position = -64 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: Smlt4434: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaK	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4435: N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)	N-acetylgalactosamine kinase, ROK-type (EC 2.7.1.157)
agaZ	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4436: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaR	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4437: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family
agaA	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4438: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)
agaP-III	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4439: Predicted N-acetylgalactosamine permease, sugar transporter family	Predicted N-acetylgalactosamine permease, sugar transporter family

CRON 2.
agaH-III	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	* Stenotrophomonas maltophilia K279a Site: position = -313 score = 8.23278 sequence = CTTTCG-(13)-CGAAAG Gene: Smlt4433: Predicted secreted glycosyl hydrolase, GH31 family	Predicted secreted glycosyl hydrolase, GH31 family
omp_aga	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4432: TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane	TonB-dependent receptor possibly related to N-acetylgalactosamine uptake through the outer membrane
agaO	Xylella fastidiosa 9a5c	Xanthomonas axonopodis pv. citri str. 306	Xanthomonas campestris pv. campestris str. ATCC 33913	Stenotrophomonas maltophilia K279a Gene: Smlt4431: Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family	Secreted alpha-N-acetylgalactosaminidase (EC 3.2.1.49), GH109 family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR - Xanthomonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --