Regulog PreQ1 - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	PreQ1
RFAM:	RF00522
Regulation mode:
Biological process:	Queuosine biosynthesis
Effector:	Pre-queuosine1
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - PreQ1
By effector - Pre-queuosine1
By pathway - Queuosine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	4	1
Bacillus amyloliquefaciens FZB42	4	1
Bacillus pumilus SAFR-032	4	1
Bacillus licheniformis DSM 13	4	1
Anoxybacillus flavithermus WK1	3	1
Geobacillus kaustophilus HTA426	4	1
Bacillus cereus ATCC 14579	5	2
Bacillus halodurans C-125	4	1
Bacillus clausii KSM-K16	5	2
Oceanobacillus iheyensis HTE831	5	3
Paenibacillus sp. JDR-2	4	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
queT	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1667: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	* Bacillus cereus ATCC 14579 Site: position = -50 score = 53.53 sequence = ATAACGTGGTTCGAA... Gene: BC1599: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -55 score = 52.15 sequence = TATCACCGTGGTTCG... Gene: OB0440: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	Paenibacillus sp. JDR-2	Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

CRON 2.
queC	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -173 score = 43.96 sequence = CGGGAGAGGTTCTAG... Gene: BSU13720: Queuosine Biosynthesis QueC ATPase	* Bacillus amyloliquefaciens FZB42 Site: position = -53 score = 43.96 sequence = CGGGAGAGGTTCTAG... Gene: RBAM_013490: Queuosine Biosynthesis QueC ATPase	* Bacillus pumilus SAFR-032 Site: position = -203 score = 46.54 sequence = CGGGAGAGGTTCTAG... Gene: BPUM_1263: Queuosine Biosynthesis QueC ATPase	* Bacillus licheniformis DSM 13 Site: position = -182 score = 46.23 sequence = CGGGAGAGGTTCTAG... Gene: BLi01527: Queuosine Biosynthesis QueC ATPase	* Anoxybacillus flavithermus WK1 Site: position = -122 score = 40.14 sequence = CGTAGGAGAGGTTCT... Gene: Aflv_1971: Queuosine Biosynthesis QueC ATPase	* Geobacillus kaustophilus HTA426 Site: position = -116 score = 43.71 sequence = CGGGAGAGGTTTCTA... Gene: GK0975: Queuosine Biosynthesis QueC ATPase	* Bacillus cereus ATCC 14579 Site: position = -136 score = 49.62 sequence = CGGGAGAGGTTCGCG... Gene: BC1341: Queuosine Biosynthesis QueC ATPase	* Bacillus halodurans C-125 Site: position = -166 score = 48.96 sequence = TGTGAGAGAGGTTCG... Gene: BH2244: Queuosine Biosynthesis QueC ATPase	* Bacillus clausii KSM-K16 Site: position = -88 score = 46.0 sequence = GAAAGAAGAGGTTCG... Gene: ABC2129: Queuosine Biosynthesis QueC ATPase	Oceanobacillus iheyensis HTE831 Gene: OB0312: Queuosine Biosynthesis QueC ATPase	* Paenibacillus sp. JDR-2 Site: position = -137 score = 50.07 sequence = TTCAGGAGAGGTTCG... Gene: Pjdr2_4316: Queuosine Biosynthesis QueC ATPase	Queuosine Biosynthesis QueC ATPase
queD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU13730: Queuosine biosynthesis QueD, PTPS-I	Bacillus amyloliquefaciens FZB42 Gene: RBAM_013500: Queuosine biosynthesis QueD, PTPS-I	Bacillus pumilus SAFR-032 Gene: BPUM_1264: Queuosine biosynthesis QueD, PTPS-I	Bacillus licheniformis DSM 13 Gene: BLi01528: Queuosine biosynthesis QueD, PTPS-I	Anoxybacillus flavithermus WK1 Gene: Aflv_1970: Queuosine biosynthesis QueD, PTPS-I	Geobacillus kaustophilus HTA426 Gene: GK0976: Queuosine biosynthesis QueD, PTPS-I	Bacillus cereus ATCC 14579 Gene: BC1342: Queuosine biosynthesis QueD, PTPS-I	Bacillus halodurans C-125 Gene: BH2243: Queuosine biosynthesis QueD, PTPS-I	Bacillus clausii KSM-K16 Gene: ABC2128: Queuosine biosynthesis QueD, PTPS-I	* Oceanobacillus iheyensis HTE831 Site: position = -244 score = 45.67 sequence = TGCAGGAGAGGTTCG... Gene: OB2804: Queuosine biosynthesis QueD, PTPS-I	Paenibacillus sp. JDR-2 Gene: Pjdr2_4315: Queuosine biosynthesis QueD, PTPS-I	Queuosine biosynthesis QueD, PTPS-I
queE	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU13740: Queuosine Biosynthesis QueE Radical SAM	Bacillus amyloliquefaciens FZB42 Gene: RBAM_013510: Queuosine Biosynthesis QueE Radical SAM	Bacillus pumilus SAFR-032 Gene: BPUM_1265: Queuosine Biosynthesis QueE Radical SAM	Bacillus licheniformis DSM 13 Gene: BLi01529: Queuosine Biosynthesis QueE Radical SAM	Anoxybacillus flavithermus WK1 Gene: Aflv_1969: Queuosine Biosynthesis QueE Radical SAM	Geobacillus kaustophilus HTA426 Gene: GK0977: Queuosine Biosynthesis QueE Radical SAM	Bacillus cereus ATCC 14579 Gene: BC1343: Queuosine Biosynthesis QueE Radical SAM	Bacillus halodurans C-125 Gene: BH2242: Queuosine Biosynthesis QueE Radical SAM	Bacillus clausii KSM-K16 Gene: ABC2127: Queuosine Biosynthesis QueE Radical SAM	Oceanobacillus iheyensis HTE831 Gene: OB2803: Queuosine Biosynthesis QueE Radical SAM	Paenibacillus sp. JDR-2 Gene: Pjdr2_4314: Queuosine Biosynthesis QueE Radical SAM	Queuosine Biosynthesis QueE Radical SAM
queF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU13750: NADPH dependent preQ0 reductase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_013520: NADPH dependent preQ0 reductase	Bacillus pumilus SAFR-032 Gene: BPUM_1266: NADPH dependent preQ0 reductase	Bacillus licheniformis DSM 13 Gene: BLi01530: NADPH dependent preQ0 reductase	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK0978: NADPH dependent preQ0 reductase	Bacillus cereus ATCC 14579 Gene: BC1344: NADPH dependent preQ0 reductase	Bacillus halodurans C-125 Gene: BH2241: NADPH dependent preQ0 reductase	Bacillus clausii KSM-K16 Gene: ABC2126: NADPH dependent preQ0 reductase	* Oceanobacillus iheyensis HTE831 Site: position = -116 score = 47.2 sequence = TTTGTTAGAGGTTCT... Gene: OB2210: NADPH dependent preQ0 reductase	Paenibacillus sp. JDR-2 Gene: Pjdr2_4313: NADPH dependent preQ0 reductase	NADPH dependent preQ0 reductase
ypdP	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU21980: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Bacillus amyloliquefaciens FZB42 Gene: RBAM_020120: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Bacillus pumilus SAFR-032 Gene: BPUM_1934: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Bacillus licheniformis DSM 13 Gene: BLi02337: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Anoxybacillus flavithermus WK1 Gene: Aflv_1488: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -55 score = 30.43 sequence = CAACAACGCAGTTCG... Gene: ABC0888: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Oceanobacillus iheyensis HTE831 Gene: OB2209: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Paenibacillus sp. JDR-2 Gene: Pjdr2_2254: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PreQ1 - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --