Regulog PreQ1 - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | PreQ1 |
| RFAM: | RF00522 |
| Regulation mode: | |
| Biological process: | Queuosine biosynthesis |
| Effector: | Pre-queuosine1 |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - PreQ1
- By effector - Pre-queuosine1
- By pathway - Queuosine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 4 | 2 |
| Staphylococcus capitis SK14 | 4 | 2 |
| Staphylococcus epidermidis ATCC 12228 | 4 | 2 |
| Staphylococcus carnosus subsp. carnosus TM300 | 4 | 2 |
| Staphylococcus haemolyticus JCSC1435 | 4 | 2 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 4 | 2 |
| Macrococcus caseolyticus JCSC5402 | 3 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| ypdP |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -53 score = 14.79 sequence = ATTGAGCGGTTTCTA... Gene: SA1265: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
*
Staphylococcus capitis SK14 Site: position = -50 score = 21.6 sequence = TTTTCGCGGTTTCTA... Gene: STACA0001_1686: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -51 score = 25.9 sequence = TTTTGGCGGTTTCTA... Gene: SE1126: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -49 score = 19.12 sequence = AGTTTGCGGTTTCTA... Gene: Sca_1074: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -51 score = 17.75 sequence = TGTTTTTGCGGTTTC... Gene: SH1474: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -53 score = 20.45 sequence = TTATTTTGCGGTTTC... Gene: SSP1307: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
Gene: MCCL_1083: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter |
| CRON 2. | ||||||||
| queC |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -217 score = 34.93 sequence = AATATCAGAGGTTTC... Gene: SA0667: Queuosine Biosynthesis QueC ATPase |
*
Staphylococcus capitis SK14 Site: position = -187 score = 39.86 sequence = AAAAAGAGGTTCCTA... Gene: STACA0001_0317: Queuosine Biosynthesis QueC ATPase |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -179 score = 41.79 sequence = AATAACAGAGGTTCC... Gene: SE0487: Queuosine Biosynthesis QueC ATPase |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -212 score = 34.17 sequence = ATAAACAGAGGTTCC... Gene: Sca_0360: Queuosine Biosynthesis QueC ATPase |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -207 score = 39.63 sequence = CAAAAGAGGTTCCTA... Gene: SH2186: Queuosine Biosynthesis QueC ATPase |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -145 score = 39.51 sequence = ATAAAGAGGTTCCTA... Gene: SSP2008: Queuosine Biosynthesis QueC ATPase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -87 score = 38.7 sequence = AATATAAGAGGTTCC... Gene: MCCL_0465: Queuosine Biosynthesis QueC ATPase |
Queuosine Biosynthesis QueC ATPase |
| queD |
Gene: SA0666: Queuosine biosynthesis QueD, PTPS-I |
Gene: STACA0001_0318: Queuosine biosynthesis QueD, PTPS-I |
Gene: SE0486: Queuosine biosynthesis QueD, PTPS-I |
Gene: Sca_0359: Queuosine biosynthesis QueD, PTPS-I |
Gene: SH2187: Queuosine biosynthesis QueD, PTPS-I |
Gene: SSP2009: Queuosine biosynthesis QueD, PTPS-I |
Gene: MCCL_0464: Queuosine biosynthesis QueD, PTPS-I |
Queuosine biosynthesis QueD, PTPS-I |
| queE |
Gene: SA0665: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: STACA0001_0319: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: SE0485: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: Sca_0358: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: SH2188: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: SSP2010: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Gene: MCCL_0463: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |