Regulog PreQ1 - Staphylococcaceae

Properties
Regulator type:	RNA regulatory element
Name:	PreQ1
RFAM:	RF00522
Regulation mode:
Biological process:	Queuosine biosynthesis
Effector:	Pre-queuosine1
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Staphylococcaceae
By RNA motif - PreQ1
By effector - Pre-queuosine1
By pathway - Queuosine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Staphylococcus aureus subsp. aureus N315	4	2
Staphylococcus capitis SK14	4	2
Staphylococcus epidermidis ATCC 12228	4	2
Staphylococcus carnosus subsp. carnosus TM300	4	2
Staphylococcus haemolyticus JCSC1435	4	2
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305	4	2
Macrococcus caseolyticus JCSC5402	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes								Function

CRON 1.
ypdP	* Staphylococcus aureus subsp. aureus N315 Site: position = -53 score = 14.79 sequence = ATTGAGCGGTTTCTA... Gene: SA1265: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	* Staphylococcus capitis SK14 Site: position = -50 score = 21.6 sequence = TTTTCGCGGTTTCTA... Gene: STACA0001_1686: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	* Staphylococcus epidermidis ATCC 12228 Site: position = -51 score = 25.9 sequence = TTTTGGCGGTTTCTA... Gene: SE1126: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -49 score = 19.12 sequence = AGTTTGCGGTTTCTA... Gene: Sca_1074: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	* Staphylococcus haemolyticus JCSC1435 Site: position = -51 score = 17.75 sequence = TGTTTTTGCGGTTTC... Gene: SH1474: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -53 score = 20.45 sequence = TTATTTTGCGGTTTC... Gene: SSP1307: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Macrococcus caseolyticus JCSC5402 Gene: MCCL_1083: Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter	Substrate-specific component YpdP (COG1738) of predicted queuosine-regulated ECF transporter

CRON 2.
queC	* Staphylococcus aureus subsp. aureus N315 Site: position = -217 score = 34.93 sequence = AATATCAGAGGTTTC... Gene: SA0667: Queuosine Biosynthesis QueC ATPase	* Staphylococcus capitis SK14 Site: position = -187 score = 39.86 sequence = AAAAAGAGGTTCCTA... Gene: STACA0001_0317: Queuosine Biosynthesis QueC ATPase	* Staphylococcus epidermidis ATCC 12228 Site: position = -179 score = 41.79 sequence = AATAACAGAGGTTCC... Gene: SE0487: Queuosine Biosynthesis QueC ATPase	* Staphylococcus carnosus subsp. carnosus TM300 Site: position = -212 score = 34.17 sequence = ATAAACAGAGGTTCC... Gene: Sca_0360: Queuosine Biosynthesis QueC ATPase	* Staphylococcus haemolyticus JCSC1435 Site: position = -207 score = 39.63 sequence = CAAAAGAGGTTCCTA... Gene: SH2186: Queuosine Biosynthesis QueC ATPase	* Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -145 score = 39.51 sequence = ATAAAGAGGTTCCTA... Gene: SSP2008: Queuosine Biosynthesis QueC ATPase	* Macrococcus caseolyticus JCSC5402 Site: position = -87 score = 38.7 sequence = AATATAAGAGGTTCC... Gene: MCCL_0465: Queuosine Biosynthesis QueC ATPase	Queuosine Biosynthesis QueC ATPase
queD	Staphylococcus aureus subsp. aureus N315 Gene: SA0666: Queuosine biosynthesis QueD, PTPS-I	Staphylococcus capitis SK14 Gene: STACA0001_0318: Queuosine biosynthesis QueD, PTPS-I	Staphylococcus epidermidis ATCC 12228 Gene: SE0486: Queuosine biosynthesis QueD, PTPS-I	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0359: Queuosine biosynthesis QueD, PTPS-I	Staphylococcus haemolyticus JCSC1435 Gene: SH2187: Queuosine biosynthesis QueD, PTPS-I	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP2009: Queuosine biosynthesis QueD, PTPS-I	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0464: Queuosine biosynthesis QueD, PTPS-I	Queuosine biosynthesis QueD, PTPS-I
queE	Staphylococcus aureus subsp. aureus N315 Gene: SA0665: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Staphylococcus capitis SK14 Gene: STACA0001_0319: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Staphylococcus epidermidis ATCC 12228 Gene: SE0485: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_0358: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Staphylococcus haemolyticus JCSC1435 Gene: SH2188: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Gene: SSP2010: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	Macrococcus caseolyticus JCSC5402 Gene: MCCL_0463: 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PreQ1 - Staphylococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --