Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SAM - Cyanobacteria

Properties
Regulator type: RNA regulatory element
Name: SAM
RFAM: RF00162
Regulation mode:
Biological process: Methionine biosynthesis
Effector: S-adenosylmethionine
Phylum: Cyanobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7425
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313
Synechococcus sp. JA-3-3Ab 1 1
Synechococcus sp. WH 8102
Gloeobacter violaceus PCC 7421 1 1
Thermosynechococcus elongatus BP-1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metK
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A1714: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Synechocystis sp. PCC 6803

Gene: sll0927: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Cyanothece sp. ATCC 51142

Gene: cce_1822: S-adenosylmethionine synthetase (EC 2.5.1.6)
 2
Cyanothece sp. PCC 8801

Gene: PCC8801_1832: S-adenosylmethionine synthetase (EC 2.5.1.6)

Gene: PCC8801_3004: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4132: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Microcystis aeruginosa NIES-843

Gene: MAE_45970: S-adenosylmethionine synthetase (EC 2.5.1.6)
 2
Nostoc sp. PCC 7120

Gene: all3244: S-adenosylmethionine synthetase (EC 2.5.1.6)

Gene: alr4124: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Trichodesmium erythraeum IMS101

Gene: Tery_4661: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_2463: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT1670: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Synechococcus sp. JA-3-3Ab

Site:
position = -429
score = 74.58
sequence = TTCTTTATCCAGAGC...

Gene: CYA_1186: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Synechococcus sp. WH 8102

Gene: SYNW1987: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Gloeobacter violaceus PCC 7421

Site:
position = -183
score = 78.51
sequence = TGACTTATCCAGAGC...

Gene: gll2577: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Thermosynechococcus elongatus BP-1

Gene: null: S-adenosylmethionine synthetase (EC 2.5.1.6)
S-adenosylmethionine synthetase (EC 2.5.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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