Regulog SAM - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 6 | 4 |
| Staphylococcus capitis SK14 | 6 | 4 |
| Staphylococcus epidermidis ATCC 12228 | 6 | 4 |
| Staphylococcus carnosus subsp. carnosus TM300 | 14 | 8 |
| Staphylococcus haemolyticus JCSC1435 | 8 | 6 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 9 | 6 |
| Macrococcus caseolyticus JCSC5402 | 17 | 8 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| metK |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -218 score = 79.24 sequence = TCTCTTATCCTGAGT... Gene: SA1608: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Staphylococcus capitis SK14 Site: position = -221 score = 80.83 sequence = TCTCTTATCCTGAGT... Gene: STACA0001_0676: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -219 score = 82.51 sequence = TCTCTTATCCTGAGT... Gene: SE1458: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -225 score = 70.59 sequence = TCTCTTATCCTGAGT... Gene: Sca_1389: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -225 score = 79.25 sequence = TCTTATCCTGAGTGG... Gene: SH1139: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -221 score = 80.18 sequence = TCTTATCCTGAGTGG... Gene: SSP0976: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -201 score = 72.14 sequence = TCTCTTATCCAGAGT... Gene: MCCL_1498: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 2. | ||||||||
| metT |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -107 score = 76.1 sequence = TCACTTATCTAGAGA... Gene: SA2117: Methionine transporter MetT |
*
Staphylococcus capitis SK14 Site: position = -291 score = 77.27 sequence = ACTTATCGAGAGAAG... Gene: STACA0001_1163: Methionine transporter MetT |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -231 score = 78.75 sequence = TAACTTATCAAGAGA... Gene: SE1902: Methionine transporter MetT |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -82 score = 71.74 sequence = TTGCTTATCAAGAGA... Gene: Sca_1822: Methionine transporter MetT |
Gene: SH0729: Methionine transporter MetT |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -179 score = 75.05 sequence = ACTTATCAAGAGAAG... Gene: SSP0578: Methionine transporter MetT |
|
Methionine transporter MetT |
| CRON 3. | ||||||||
| metX |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -136 score = 69.39 sequence = TCTTATTGTGAGAAG... Gene: SA0011: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Staphylococcus capitis SK14 Site: position = -167 score = 64.24 sequence = AATCTTATTTCGAGA... Gene: STACA0001_1363: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -164 score = 68.61 sequence = CCTTATTTTGAGAAG... Gene: SE0011: Homoserine O-acetyltransferase (EC 2.3.1.31) |
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -171 score = 71.51 sequence = ACTTATTAAGAGAAG... Gene: SH0011: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -159 score = 60.06 sequence = TCTTATTTCGAGAAG... Gene: SSP0012: Homoserine O-acetyltransferase (EC 2.3.1.31) |
|
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| CRON 4. | ||||||||
| metN |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -191 score = 85.67 sequence = TCTTATCGAGAGTGG... Gene: SA0769: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus capitis SK14 Site: position = -193 score = 89.61 sequence = ACTCTTATCGAGAGA... Gene: STACA0001_0218: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -195 score = 89.56 sequence = TCTTATCGAGAGAGG... Gene: SE0600: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -203 score = 89.52 sequence = TCTTATCAAGAGAGG... Gene: Sca_0455: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -191 score = 92.73 sequence = ATTCTTATCAAGAGA... Gene: SH2047: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -198 score = 84.24 sequence = ACTCTTATCACGAGA... Gene: SSP1866: Methionine ABC transporter ATP-binding protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -173 score = 89.62 sequence = TCTTATCAAGAGAGG... Gene: MCCL_0539: Methionine ABC transporter ATP-binding protein |
Methionine ABC transporter ATP-binding protein |
| metP |
Gene: SA0770: Methionine ABC transporter permease protein |
Gene: STACA0001_0217: Methionine ABC transporter permease protein |
Gene: SE0601: Methionine ABC transporter permease protein |
Gene: Sca_0456: Methionine ABC transporter permease protein |
Gene: SH2046: Methionine ABC transporter permease protein |
Gene: SSP1865: Methionine ABC transporter permease protein |
Gene: MCCL_0540: Methionine ABC transporter permease protein |
Methionine ABC transporter permease protein |
| metQ |
Gene: SA0771: Methionine ABC transporter substrate-binding protein |
Gene: STACA0001_0216: Methionine ABC transporter substrate-binding protein |
Gene: SE0602: Methionine ABC transporter substrate-binding protein |
Gene: Sca_0457: Methionine ABC transporter substrate-binding protein |
Gene: SH2045: Methionine ABC transporter substrate-binding protein |
Gene: SSP1864: Methionine ABC transporter substrate-binding protein |
Gene: MCCL_0541: Methionine ABC transporter substrate-binding protein |
Methionine ABC transporter substrate-binding protein |
| CRON 5. | ||||||||
| SH0402 |
|
|
|
|
*
Staphylococcus haemolyticus JCSC1435 Site: position = -173 score = 74.05 sequence = TCTTATTAAGAGTGA... Gene: SH0402: Hypothetical protein |
|
|
Hypothetical protein |
| CRON 6. | ||||||||
| metQ2 |
|
|
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -209 score = 81.89 sequence = TCTTATCCAGAGCGG... Gene: Sca_0342: Methionine ABC transporter substrate-binding protein |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -218 score = 88.89 sequence = TCTTATCAAGAGTGG... Gene: SH0458: Methionine ABC transporter substrate-binding protein |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -195 score = 87.78 sequence = TCTTATCAAGAGTGG... Gene: SSP0248: Methionine ABC transporter substrate-binding protein |
*
Macrococcus caseolyticus JCSC5402 Site: position = -188 score = 80.01 sequence = TCTTATCCAGAGAGG... Gene: MCCL_0254: Methionine ABC transporter substrate-binding protein |
Methionine ABC transporter substrate-binding protein |
| SSP0249 |
|
|
|
Gene: Sca_0343: Putative dehydrogenase |
|
Gene: SSP0249: Putative dehydrogenase |
Gene: MCCL_0255: Putative dehydrogenase |
Putative dehydrogenase |
| CRON 7. | ||||||||
| mtnE |
Gene: SA2347: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
Gene: STACA0001_0934: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
Gene: SE2122: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -208 score = 73.9 sequence = ACTTATCAAGAGAAG... Gene: Sca_0010: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -186 score = 72.07 sequence = ACTTATCCAGAGAAG... Gene: SH0492: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -166 score = 76.5 sequence = ACTTATCCAGAGAAG... Gene: SSP0294: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -157 score = 81.74 sequence = TCTTATCCAGAGAAG... Gene: MCCL_0180: N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
N-succinyldiaminopimelate aminotransferase (EC 2.6.1.17) |
| CRON 8. | ||||||||
| cysD |
|
|
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -159 score = 83.14 sequence = ACTTATCCAGAATGG... Gene: Sca_1003: O-acetylhomoserine (thiol)-lyase (EC 2.5.1.49) |
|
|
*
Macrococcus caseolyticus JCSC5402 Site: position = -160 score = 91.21 sequence = ATGCTTATCCAGAGT... Gene: MCCL_0060: O-acetylhomoserine (thiol)-lyase (EC 2.5.1.49) |
O-acetylhomoserine (thiol)-lyase (EC 2.5.1.49) |
| metA |
|
|
|
Gene: Sca_1004: Homoserine O-succinyltransferase (EC 2.3.1.46) |
|
|
Gene: MCCL_0059: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Homoserine O-succinyltransferase (EC 2.3.1.46) |
| CRON 9. | ||||||||
| metN3 |
Gene: SA0420: Methionine ABC transporter ATP-binding protein |
Gene: STACA0001_1483: Methionine ABC transporter ATP-binding protein |
Gene: SE2322: Methionine ABC transporter ATP-binding protein |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -226 score = 73.09 sequence = ACTCTTATCCAGAGA... Gene: Sca_2191: Methionine ABC transporter ATP-binding protein |
|
|
*
Macrococcus caseolyticus JCSC5402 Site: position = -172 score = 72.86 sequence = TTTTATCAAGAGAGA... Gene: MCCL_0417: Methionine ABC transporter ATP-binding protein |
Methionine ABC transporter ATP-binding protein |
| metP3 |
Gene: SA0421: Methionine ABC transporter permease protein |
Gene: STACA0001_1484: Methionine ABC transporter permease protein |
Gene: SE2321: Methionine ABC transporter permease protein |
Gene: Sca_2190: Methionine ABC transporter permease protein |
|
|
Gene: MCCL_0418: Methionine ABC transporter permease protein |
Methionine ABC transporter permease protein |
| metQ3 |
Gene: SA0422: Methionine ABC transporter substrate-binding protein |
Gene: STACA0001_1485: Methionine ABC transporter substrate-binding protein |
Gene: SE2320: Methionine ABC transporter substrate-binding protein |
Gene: Sca_2189: Methionine ABC transporter substrate-binding protein |
|
|
Gene: MCCL_0419: Methionine ABC transporter substrate-binding protein |
Methionine ABC transporter substrate-binding protein |
| CRON 10. | ||||||||
| p20d2 |
Gene: SA1935: Predicted peptidase |
Gene: STACA0001_0837: Predicted peptidase |
Gene: SE1731: Predicted peptidase |
Gene: Sca_1636: Predicted peptidase |
Gene: SH0902: Predicted peptidase |
Gene: SSP0752: Predicted peptidase |
*
Macrococcus caseolyticus JCSC5402 Site: position = -166 score = 79.5 sequence = ACACTTATCGAGACG... Gene: MCCL_1787: Predicted peptidase |
Predicted peptidase |
| SA1934 |
Gene: SA1934: Hypothetical protein |
Gene: STACA0001_0836: Hypothetical protein |
Gene: SE1730: Hypothetical protein |
|
Gene: SH0903: Hypothetical protein |
Gene: SSP0753: Hypothetical protein |
Gene: MCCL_1786: Hypothetical protein |
Hypothetical protein |
| CRON 11. | ||||||||
| mmuP |
|
|
|
|
|
Gene: SSP2173: Probable S-methylmethionine permease |
*
Macrococcus caseolyticus JCSC5402 Site: position = -150 score = 77.92 sequence = ACTTATACAGAGAGA... Gene: MCCL_0329: Probable S-methylmethionine permease |
Probable S-methylmethionine permease |
| metE |
|
|
|
|
|
Gene: SSP2172: Homocysteine S-methyltransferase (EC 2.1.1.10) |
Gene: MCCL_0330: Homocysteine S-methyltransferase (EC 2.1.1.10) |
Homocysteine S-methyltransferase (EC 2.1.1.10) |
| MCCL_0331 |
|
|
|
|
|
|
Gene: MCCL_0331: Hypothetical protein |
Hypothetical protein |
| CRON 12. | ||||||||
| Sca_0068 |
|
|
|
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -488 score = 76.07 sequence = TCTTATTAAGAGTGA... Gene: Sca_0068: Putative lipoprotein |
|
|
Gene: MCCL_0531: Putative lipoprotein |
Putative lipoprotein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |