Regulog Glycine - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 1 |
| Bacillus amyloliquefaciens FZB42 | 4 | 2 |
| Bacillus pumilus SAFR-032 | 4 | 2 |
| Bacillus licheniformis DSM 13 | 3 | 1 |
| Anoxybacillus flavithermus WK1 | 3 | 1 |
| Geobacillus kaustophilus HTA426 | 3 | 1 |
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | 3 | 1 |
| Bacillus clausii KSM-K16 | 3 | 1 |
| Oceanobacillus iheyensis HTE831 | 3 | 1 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| gcvT |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -177 score = 33.77 sequence = TCGACGCAACTCTGG... Site: position = -274 score = 60.29 sequence = AATGACAGCAAGGGG... Gene: BSU24570: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -176 score = 24.75 sequence = ACTCTGGAGAGTGTC... Site: position = -280 score = 61.23 sequence = AATGACAGCAAGGGG... Gene: RBAM_022890: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Bacillus pumilus SAFR-032 Site: position = -201 score = 35.25 sequence = ACTCTGGAGAGTGTT... Site: position = -312 score = 62.4 sequence = GATGATGGTATGGGG... Gene: BPUM_2189: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Bacillus licheniformis DSM 13 Site: position = -250 score = 37.99 sequence = TTGACGCAACTCTGG... Site: position = -350 score = 49.62 sequence = AATGACGGCAAGGGG... Gene: BLi02631: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Anoxybacillus flavithermus WK1 Site: position = -229 score = 60.53 sequence = TGAGAACAAGGGGAG... Site: position = -145 score = 47.22 sequence = GACGCAGCTCTGGAG... Gene: Aflv_0915: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Geobacillus kaustophilus HTA426 Site: position = -192 score = 38.15 sequence = TTGACGCAGCTCTGG... Site: position = -276 score = 60.6 sequence = GATGACGGCAAGGGG... Gene: GK2425: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: BC4226: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Bacillus halodurans C-125 Site: position = -327 score = 43.11 sequence = TCGACGCAGCTCTGG... Site: position = -417 score = 62.4 sequence = GATGAAAGCAAGGGG... Gene: BH2816: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Bacillus clausii KSM-K16 Site: position = -185 score = 35.07 sequence = TTGACGCATCTCTGG... Site: position = -274 score = 59.73 sequence = GATGATGGTAAAGGG... Gene: ABC2495: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Oceanobacillus iheyensis HTE831 Site: position = -135 score = 43.37 sequence = ATGACGCAACTCTGG... Site: position = -222 score = 53.47 sequence = GAAGATTACAAGGGG... Gene: OB1904: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
|
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvP1 |
Gene: BSU24560: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: RBAM_022880: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: BPUM_2188: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: BLi02630: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Aflv_0916: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: GK2424: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: BC4225: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: BH2815: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: ABC2494: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: OB1903: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
|
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
| gcvP2 |
Gene: BSU24550: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: RBAM_022870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BPUM_2187: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BLi02629: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: Aflv_0917: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: GK2423: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BC4224: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: BH2814: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: ABC2493: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: OB1902: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
|
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
| CRON 2. | ||||||||||||
| glyP |
|
|
Gene: BPUM_0735: Sodium/glycine symporter GlyP |
Gene: BLi00817: Sodium/glycine symporter GlyP |
|
|
*
Bacillus cereus ATCC 14579 Site: position = -228 score = 60.07 sequence = GGGACGAATCTCTGG... Site: position = -330 score = 36.84 sequence = GATGAACCATTCAGG... Gene: BC2317: Sodium/glycine symporter GlyP |
Gene: BH4033: Sodium/glycine symporter GlyP |
Gene: ABC2131: Sodium/glycine symporter GlyP |
Gene: OB0872: Sodium/glycine symporter GlyP |
|
Sodium/glycine symporter GlyP |
| CRON 3. | ||||||||||||
| ydgF |
|
*
Bacillus amyloliquefaciens FZB42 Site: position = -227 score = 51.56 sequence = AGGAGCGGCTTCTGG... Gene: RBAM_036990: D-serine/D-alanine/glycine transporter |
*
Bacillus pumilus SAFR-032 Site: position = -243 score = 51.87 sequence = AGGAGCAGCTTCTGG... Gene: BPUM_3652: D-serine/D-alanine/glycine transporter |
|
|
|
|
|
|
|
|
D-serine/D-alanine/glycine transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |