Regulog Glycine - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	Glycine
RFAM:	RF00504
Regulation mode:
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - Glycine
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	1
Bacillus amyloliquefaciens FZB42	4	2
Bacillus pumilus SAFR-032	4	2
Bacillus licheniformis DSM 13	3	1
Anoxybacillus flavithermus WK1	3	1
Geobacillus kaustophilus HTA426	3	1
Bacillus cereus ATCC 14579	1	1
Bacillus halodurans C-125	3	1
Bacillus clausii KSM-K16	3	1
Oceanobacillus iheyensis HTE831	3	1
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
gcvT	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -177 score = 33.77 sequence = TCGACGCAACTCTGG... Site: position = -274 score = 60.29 sequence = AATGACAGCAAGGGG... Gene: BSU24570: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bacillus amyloliquefaciens FZB42 Site: position = -176 score = 24.75 sequence = ACTCTGGAGAGTGTC... Site: position = -280 score = 61.23 sequence = AATGACAGCAAGGGG... Gene: RBAM_022890: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bacillus pumilus SAFR-032 Site: position = -201 score = 35.25 sequence = ACTCTGGAGAGTGTT... Site: position = -312 score = 62.4 sequence = GATGATGGTATGGGG... Gene: BPUM_2189: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bacillus licheniformis DSM 13 Site: position = -250 score = 37.99 sequence = TTGACGCAACTCTGG... Site: position = -350 score = 49.62 sequence = AATGACGGCAAGGGG... Gene: BLi02631: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Anoxybacillus flavithermus WK1 Site: position = -229 score = 60.53 sequence = TGAGAACAAGGGGAG... Site: position = -145 score = 47.22 sequence = GACGCAGCTCTGGAG... Gene: Aflv_0915: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Geobacillus kaustophilus HTA426 Site: position = -192 score = 38.15 sequence = TTGACGCAGCTCTGG... Site: position = -276 score = 60.6 sequence = GATGACGGCAAGGGG... Gene: GK2425: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Bacillus cereus ATCC 14579 Gene: BC4226: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bacillus halodurans C-125 Site: position = -327 score = 43.11 sequence = TCGACGCAGCTCTGG... Site: position = -417 score = 62.4 sequence = GATGAAAGCAAGGGG... Gene: BH2816: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Bacillus clausii KSM-K16 Site: position = -185 score = 35.07 sequence = TTGACGCATCTCTGG... Site: position = -274 score = 59.73 sequence = GATGATGGTAAAGGG... Gene: ABC2495: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Oceanobacillus iheyensis HTE831 Site: position = -135 score = 43.37 sequence = ATGACGCAACTCTGG... Site: position = -222 score = 53.47 sequence = GAAGATTACAAGGGG... Gene: OB1904: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Paenibacillus sp. JDR-2	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvP1	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU24560: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_022880: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus pumilus SAFR-032 Gene: BPUM_2188: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus licheniformis DSM 13 Gene: BLi02630: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Anoxybacillus flavithermus WK1 Gene: Aflv_0916: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Geobacillus kaustophilus HTA426 Gene: GK2424: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus cereus ATCC 14579 Gene: BC4225: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus halodurans C-125 Gene: BH2815: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Bacillus clausii KSM-K16 Gene: ABC2494: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Oceanobacillus iheyensis HTE831 Gene: OB1903: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)	Paenibacillus sp. JDR-2	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2)
gcvP2	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU24550: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_022870: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus pumilus SAFR-032 Gene: BPUM_2187: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus licheniformis DSM 13 Gene: BLi02629: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Anoxybacillus flavithermus WK1 Gene: Aflv_0917: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Geobacillus kaustophilus HTA426 Gene: GK2423: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus cereus ATCC 14579 Gene: BC4224: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus halodurans C-125 Gene: BH2814: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Bacillus clausii KSM-K16 Gene: ABC2493: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Oceanobacillus iheyensis HTE831 Gene: OB1902: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)	Paenibacillus sp. JDR-2	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2)

CRON 2.
glyP	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_0735: Sodium/glycine symporter GlyP	Bacillus licheniformis DSM 13 Gene: BLi00817: Sodium/glycine symporter GlyP	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -228 score = 60.07 sequence = GGGACGAATCTCTGG... Site: position = -330 score = 36.84 sequence = GATGAACCATTCAGG... Gene: BC2317: Sodium/glycine symporter GlyP	Bacillus halodurans C-125 Gene: BH4033: Sodium/glycine symporter GlyP	Bacillus clausii KSM-K16 Gene: ABC2131: Sodium/glycine symporter GlyP	Oceanobacillus iheyensis HTE831 Gene: OB0872: Sodium/glycine symporter GlyP	Paenibacillus sp. JDR-2	Sodium/glycine symporter GlyP

CRON 3.
ydgF	Bacillus subtilis subsp. subtilis str. 168	* Bacillus amyloliquefaciens FZB42 Site: position = -227 score = 51.56 sequence = AGGAGCGGCTTCTGG... Gene: RBAM_036990: D-serine/D-alanine/glycine transporter	* Bacillus pumilus SAFR-032 Site: position = -243 score = 51.87 sequence = AGGAGCAGCTTCTGG... Gene: BPUM_3652: D-serine/D-alanine/glycine transporter	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	D-serine/D-alanine/glycine transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Glycine - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --