Regulog Glycine - Staphylococcaceae
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Staphylococcaceae
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Staphylococcus aureus subsp. aureus N315 | 3 | 1 |
| Staphylococcus capitis SK14 | 3 | 1 |
| Staphylococcus epidermidis ATCC 12228 | 3 | 1 |
| Staphylococcus carnosus subsp. carnosus TM300 | 4 | 1 |
| Staphylococcus haemolyticus JCSC1435 | 3 | 1 |
| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 | 3 | 1 |
| Macrococcus caseolyticus JCSC5402 | 3 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| gcvT |
*
Staphylococcus aureus subsp. aureus N315 Site: position = -173 score = 68.14 sequence = AGTGATCAGTATTAG... Gene: SA1367: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Staphylococcus capitis SK14 Site: position = -213 score = 44.55 sequence = ATTGATCAGTATTAG... Gene: STACA0001_1774: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Staphylococcus epidermidis ATCC 12228 Site: position = -222 score = 51.94 sequence = ATTGATCAGTATTAG... Gene: SE1222: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Staphylococcus carnosus subsp. carnosus TM300 Site: position = -214 score = 55.81 sequence = AATGATCAGTATTGG... Gene: Sca_1161: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Staphylococcus haemolyticus JCSC1435 Site: position = -191 score = 53.22 sequence = TGATCAGTATTAGAG... Gene: SH1379: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 Site: position = -186 score = 61.56 sequence = TGATCAGTATTAGAG... Gene: SSP1218: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Macrococcus caseolyticus JCSC5402 Site: position = -119 score = 57.89 sequence = GAAGAAGGAAATTAG... Site: position = -119 score = 57.89 sequence = GAAGAAGGAAATTAG... Gene: MCCL_1181: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvP1 |
Gene: SA1366: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: STACA0001_1773: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: SE1221: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: Sca_1160: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: SH1380: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: SSP1219: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Gene: MCCL_1180: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) |
| gcvP2 |
Gene: SA1365: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: STACA0001_1772: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: SE1220: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
2
Staphylococcus carnosus subsp. carnosus TM300 Gene: Sca_1158: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) Gene: Sca_1159: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: SH1381: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: SSP1220: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Gene: MCCL_1179: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |