Regulog Glycine - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella putrefaciens CN-32 | 1 | 1 |
| Shewanella sp W3-18-1 | 1 | 1 |
| Shewanella sp ANA-3 | 1 | 1 |
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | 1 | 1 |
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | 1 | 1 |
| Shewanella loihica PV-4 | 1 | 1 |
| Shewanella pealeana ATCC 700345 | 1 | 1 |
| Shewanella halifaxensis HAW-EB4 | 1 | 1 |
| Shewanella piezotolerans WP3 | 1 | 1 |
| Shewanella sediminis HAW-EB3 | 1 | 1 |
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| glyP |
*
Shewanella oneidensis MR-1 Site: position = -392 score = 41.76 sequence = TGAAGGTAGCAGGAG... Site: position = -270 score = 54.21 sequence = CTCTGGAGAGACTAC... Gene: SO_0858: Sodium/glycine symporter GlyP |
*
Shewanella putrefaciens CN-32 Site: position = -314 score = 53.35 sequence = GCCTCTGGAGAGACT... Site: position = -464 score = 40.15 sequence = GATGAAGGTAGCAGG... Gene: Sputcn32_3143: Sodium/glycine symporter GlyP |
*
Shewanella sp W3-18-1 Site: position = -462 score = 40.15 sequence = TGAAGGTAGCAGGAG... Site: position = -312 score = 53.35 sequence = CTCTGGAGAGACTAC... Gene: Sputw3181_0800: Sodium/glycine symporter GlyP |
*
Shewanella sp ANA-3 Site: position = -271 score = 52.92 sequence = GCCTCTGGAGAGACT... Site: position = -391 score = 42.27 sequence = GATGAAGGTAGCAGG... Gene: Shewana3_3420: Sodium/glycine symporter GlyP |
*
Shewanella sp MR-4 Site: position = -390 score = 42.2 sequence = TGAAGGTAGCAGGAG... Site: position = -269 score = 53.2 sequence = CTCTGGAGAGACTAC... Gene: Shewmr4_0714: Sodium/glycine symporter GlyP |
*
Shewanella sp MR-7 Site: position = -270 score = 53.63 sequence = GCCTCTGGAGAGACT... Site: position = -391 score = 42.2 sequence = GATGAAGGTAGCAGG... Gene: Shewmr7_3308: Sodium/glycine symporter GlyP |
*
Shewanella baltica OS155 Site: position = -374 score = 50.05 sequence = GCCTCTGGAGAGACT... Site: position = -523 score = 36.45 sequence = GATGAAGGTAGCAGG... Gene: Sbal_3506: Sodium/glycine symporter GlyP |
|
|
*
Shewanella amazonensis SB2B Site: position = -240 score = 52.52 sequence = GCCTCTGGAGAGATC... Site: position = -357 score = 36.62 sequence = GATGAAGGTAGCAGG... Gene: Sama_2953: Sodium/glycine symporter GlyP |
*
Shewanella loihica PV-4 Site: position = -355 score = 45.13 sequence = CCTCTGGAGAGACTG... Site: position = -480 score = 41.26 sequence = GATGAAGGTAGCAGG... Gene: Shew_0496: Sodium/glycine symporter GlyP |
*
Shewanella pealeana ATCC 700345 Site: position = -462 score = 35.08 sequence = TGAAGGTAGCAGGAG... Site: position = -349 score = 58.27 sequence = GACGAGCCTCTGGAG... Gene: Spea_0715: Sodium/glycine symporter GlyP |
*
Shewanella halifaxensis HAW-EB4 Site: position = -451 score = 35.71 sequence = TGAAGGTAGCAGGAG... Site: position = -337 score = 60.54 sequence = GACGAGCCTCTGGAG... Gene: Shal_0768: Sodium/glycine symporter GlyP |
*
Shewanella piezotolerans WP3 Site: position = -337 score = 59.81 sequence = TGGACGAGCCTCTGG... Gene: swp_4361: Sodium/glycine symporter GlyP |
*
Shewanella sediminis HAW-EB3 Site: position = -324 score = 52.17 sequence = TGGACGAGCCTCTGG... Site: position = -476 score = 23.06 sequence = GATGAAGGTAGCAGG... Gene: Ssed_3886: Sodium/glycine symporter GlyP |
*
Shewanella woodyi ATCC 51908 Site: position = -320 score = 53.23 sequence = GCCTCTGGAGAGACT... Site: position = -444 score = 35.82 sequence = GATGAAGGTAGCAGG... Gene: Swoo_3785: Sodium/glycine symporter GlyP |
Sodium/glycine symporter GlyP |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |