Regulog Lysine - Thermotogales

Properties
Regulator type:	RNA regulatory element
Name:	Lysine
RFAM:	RF00168
Regulation mode:
Biological process:	Lysine biosynthesis
Effector:	Lysine
Phylum:	Thermotogae

Member of regulog collections

By taxonomy - Thermotogales
By RNA motif - Lysine
By effector - Lysine
By pathway - Lysine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Thermotoga maritima MSB8	8	1
Thermotoga sp. RQ2	8	1
Thermotoga neapolitana DSM 4359	8	1
Thermotoga petrophila RKU-1	8	1
Thermotoga naphthophila RKU-10	8	1
Thermotoga lettingae TMO
Thermosipho africanus TCF52B	8	1
Thermosipho melanesiensis BI429	7	1
Fervidobacterium nodosum Rt17-B1
Petrotoga mobilis SJ95	8	1
Thermotogales bacterium TBF 19.5.1	7	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
asd	* Thermotoga maritima MSB8 Site: position = -261 score = 90.7 sequence = TTGACCCGACGGAGG... Gene: TM1523: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermotoga sp. RQ2 Site: position = -267 score = 90.7 sequence = TTGACCCGACGGAGG... Gene: TRQ2_1417: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermotoga neapolitana DSM 4359 Site: position = -267 score = 88.92 sequence = GACCCGACGGAGGAG... Gene: CTN_0970: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermotoga petrophila RKU-1 Site: position = -266 score = 85.62 sequence = GACCCGACGGAGGCG... Gene: Tpet_1269: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermotoga naphthophila RKU-10 Site: position = -266 score = 85.62 sequence = GACCCGACGGAGGCG... Gene: Tnap_1286: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Thermotoga lettingae TMO	* Thermosipho africanus TCF52B Site: position = -246 score = 125.16 sequence = ATACGATCGGAGGCG... Gene: THA_170: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermosipho melanesiensis BI429 Site: position = -246 score = 120.39 sequence = ATACGATCGGAGGTG... Gene: Tmel_1873: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0070: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Petrotoga mobilis SJ95 Site: position = -253 score = 101.15 sequence = TATTTAAAGCGGAGG... Gene: Pmob_1226: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	* Thermotogales bacterium TBF 19.5.1 Site: position = -259 score = 95.32 sequence = TTTACCCCACAGAGG... Gene: Kole_0108: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)	Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
lysA	Thermotoga maritima MSB8 Gene: TM1517: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotoga sp. RQ2 Gene: TRQ2_1411: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotoga neapolitana DSM 4359 Gene: CTN_0976: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotoga petrophila RKU-1 Gene: Tpet_1275: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotoga naphthophila RKU-10 Gene: Tnap_1292: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotoga lettingae TMO Gene: Tlet_1265: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermosipho africanus TCF52B Gene: THA_1325: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermosipho melanesiensis BI429 Gene: Tmel_1043: Diaminopimelate decarboxylase (EC 4.1.1.20)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0425: Diaminopimelate decarboxylase (EC 4.1.1.20)	2 Petrotoga mobilis SJ95 Gene: Pmob_0477: Diaminopimelate decarboxylase (EC 4.1.1.20) Gene: Pmob_1225: Diaminopimelate decarboxylase (EC 4.1.1.20)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0871: Diaminopimelate decarboxylase (EC 4.1.1.20)	Diaminopimelate decarboxylase (EC 4.1.1.20)
dapA	Thermotoga maritima MSB8 Gene: TM1521: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotoga sp. RQ2 Gene: TRQ2_1415: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotoga neapolitana DSM 4359 Gene: CTN_0972: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotoga petrophila RKU-1 Gene: Tpet_1271: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotoga naphthophila RKU-10 Gene: Tnap_1288: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotoga lettingae TMO Gene: Tlet_0733: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermosipho africanus TCF52B Gene: THA_172: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermosipho melanesiensis BI429 Gene: Tmel_1875: Dihydrodipicolinate synthase (EC 4.2.1.52)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0072: Dihydrodipicolinate synthase (EC 4.2.1.52)	Petrotoga mobilis SJ95 Gene: Pmob_1224: Dihydrodipicolinate synthase (EC 4.2.1.52)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0106: Dihydrodipicolinate synthase (EC 4.2.1.52)	Dihydrodipicolinate synthase (EC 4.2.1.52)
dapB	Thermotoga maritima MSB8 Gene: TM1520: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotoga sp. RQ2 Gene: TRQ2_1414: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotoga neapolitana DSM 4359 Gene: CTN_0973: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotoga petrophila RKU-1 Gene: Tpet_1272: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotoga naphthophila RKU-10 Gene: Tnap_1289: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotoga lettingae TMO Gene: Tlet_0732: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermosipho africanus TCF52B Gene: THA_173: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermosipho melanesiensis BI429 Gene: Tmel_1876: Dihydrodipicolinate reductase (EC 1.3.1.26)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0073: Dihydrodipicolinate reductase (EC 1.3.1.26)	Petrotoga mobilis SJ95 Gene: Pmob_1223: Dihydrodipicolinate reductase (EC 1.3.1.26)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0105: Dihydrodipicolinate reductase (EC 1.3.1.26)	Dihydrodipicolinate reductase (EC 1.3.1.26)
dapD	Thermotoga maritima MSB8 Gene: TM1519: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotoga sp. RQ2 Gene: TRQ2_1413: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotoga neapolitana DSM 4359 Gene: CTN_0974: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotoga petrophila RKU-1 Gene: Tpet_1273: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotoga naphthophila RKU-10 Gene: Tnap_1290: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotoga lettingae TMO Gene: Tlet_1948: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermosipho africanus TCF52B Gene: THA_174: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermosipho melanesiensis BI429 Gene: Tmel_1877: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0074: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Petrotoga mobilis SJ95 Gene: Pmob_1222: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0104: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89)
lysC	Thermotoga maritima MSB8 Gene: TM1518: Aspartokinase (EC 2.7.2.4)	Thermotoga sp. RQ2 Gene: TRQ2_1412: Aspartokinase (EC 2.7.2.4)	Thermotoga neapolitana DSM 4359 Gene: CTN_0975: Aspartokinase (EC 2.7.2.4)	Thermotoga petrophila RKU-1 Gene: Tpet_1274: Aspartokinase (EC 2.7.2.4)	Thermotoga naphthophila RKU-10 Gene: Tnap_1291: Aspartokinase (EC 2.7.2.4)	Thermotoga lettingae TMO Gene: Tlet_0731: Aspartokinase (EC 2.7.2.4)	Thermosipho africanus TCF52B Gene: THA_175: Aspartokinase (EC 2.7.2.4)	Thermosipho melanesiensis BI429 Gene: Tmel_1878: Aspartokinase (EC 2.7.2.4)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0075: Aspartokinase (EC 2.7.2.4)	Petrotoga mobilis SJ95 Gene: Pmob_1221: Aspartokinase (EC 2.7.2.4)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0103: Aspartokinase (EC 2.7.2.4)	Aspartokinase (EC 2.7.2.4)
argD	Thermotoga maritima MSB8	Thermotoga sp. RQ2	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga naphthophila RKU-10	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_176: Acetylornithine aminotransferase (EC 2.6.1.11)	Thermosipho melanesiensis BI429 Gene: Tmel_1879: Acetylornithine aminotransferase (EC 2.6.1.11)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0076: Acetylornithine aminotransferase (EC 2.6.1.11)	Petrotoga mobilis SJ95 Gene: Pmob_1220: Acetylornithine aminotransferase (EC 2.6.1.11)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0102: Acetylornithine aminotransferase (EC 2.6.1.11)	Acetylornithine aminotransferase (EC 2.6.1.11)
dapL	Thermotoga maritima MSB8 Gene: TM1516: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotoga sp. RQ2 Gene: TRQ2_1410: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotoga neapolitana DSM 4359 Gene: CTN_0977: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotoga petrophila RKU-1 Gene: Tpet_1276: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotoga naphthophila RKU-10 Gene: Tnap_1293: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_1326: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermosipho melanesiensis BI429 Gene: Tmel_1044: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0081: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Petrotoga mobilis SJ95 Gene: Pmob_1219: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0532: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)	N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47)
dapF	Thermotoga maritima MSB8 Gene: TM1522: Diaminopimelate epimerase (EC 5.1.1.7)	Thermotoga sp. RQ2 Gene: TRQ2_1416: Diaminopimelate epimerase (EC 5.1.1.7)	Thermotoga neapolitana DSM 4359 Gene: CTN_0971: Diaminopimelate epimerase (EC 5.1.1.7)	Thermotoga petrophila RKU-1 Gene: Tpet_1270: Diaminopimelate epimerase (EC 5.1.1.7)	Thermotoga naphthophila RKU-10 Gene: Tnap_1287: Diaminopimelate epimerase (EC 5.1.1.7)	Thermotoga lettingae TMO Gene: Tlet_1949: Diaminopimelate epimerase (EC 5.1.1.7)	Thermosipho africanus TCF52B Gene: THA_171: Diaminopimelate epimerase (EC 5.1.1.7)	Thermosipho melanesiensis BI429 Gene: Tmel_1874: Diaminopimelate epimerase (EC 5.1.1.7)	Fervidobacterium nodosum Rt17-B1 Gene: Fnod_0071: Diaminopimelate epimerase (EC 5.1.1.7)	Petrotoga mobilis SJ95	Thermotogales bacterium TBF 19.5.1 Gene: Kole_0107: Diaminopimelate epimerase (EC 5.1.1.7)	Diaminopimelate epimerase (EC 5.1.1.7)
THA_177	Thermotoga maritima MSB8	Thermotoga sp. RQ2	Thermotoga neapolitana DSM 4359	Thermotoga petrophila RKU-1	Thermotoga naphthophila RKU-10	Thermotoga lettingae TMO	Thermosipho africanus TCF52B Gene: THA_177: lipase/acylhydrolase, GDSL family	Thermosipho melanesiensis BI429	Fervidobacterium nodosum Rt17-B1	Petrotoga mobilis SJ95	Thermotogales bacterium TBF 19.5.1	lipase/acylhydrolase, GDSL family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Lysine - Thermotogales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --