Regulog Lysine - Thermotogales
| Regulator type: | RNA regulatory element |
| Name: | Lysine |
| RFAM: | RF00168 |
| Regulation mode: | |
| Biological process: | Lysine biosynthesis |
| Effector: | Lysine |
| Phylum: | Thermotogae |
Member of regulog collections
- By taxonomy - Thermotogales
- By RNA motif - Lysine
- By effector - Lysine
- By pathway - Lysine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Thermotoga maritima MSB8 | 8 | 1 |
| Thermotoga sp. RQ2 | 8 | 1 |
| Thermotoga neapolitana DSM 4359 | 8 | 1 |
| Thermotoga petrophila RKU-1 | 8 | 1 |
| Thermotoga naphthophila RKU-10 | 8 | 1 |
| Thermotoga lettingae TMO | ||
| Thermosipho africanus TCF52B | 8 | 1 |
| Thermosipho melanesiensis BI429 | 7 | 1 |
| Fervidobacterium nodosum Rt17-B1 | ||
| Petrotoga mobilis SJ95 | 8 | 1 |
| Thermotogales bacterium TBF 19.5.1 | 7 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| asd |
*
Thermotoga maritima MSB8 Site: position = -261 score = 90.7 sequence = TTGACCCGACGGAGG... Gene: TM1523: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermotoga sp. RQ2 Site: position = -267 score = 90.7 sequence = TTGACCCGACGGAGG... Gene: TRQ2_1417: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermotoga neapolitana DSM 4359 Site: position = -267 score = 88.92 sequence = GACCCGACGGAGGAG... Gene: CTN_0970: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermotoga petrophila RKU-1 Site: position = -266 score = 85.62 sequence = GACCCGACGGAGGCG... Gene: Tpet_1269: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermotoga naphthophila RKU-10 Site: position = -266 score = 85.62 sequence = GACCCGACGGAGGCG... Gene: Tnap_1286: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
|
*
Thermosipho africanus TCF52B Site: position = -246 score = 125.16 sequence = ATACGATCGGAGGCG... Gene: THA_170: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermosipho melanesiensis BI429 Site: position = -246 score = 120.39 sequence = ATACGATCGGAGGTG... Gene: Tmel_1873: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Gene: Fnod_0070: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Petrotoga mobilis SJ95 Site: position = -253 score = 101.15 sequence = TATTTAAAGCGGAGG... Gene: Pmob_1226: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
*
Thermotogales bacterium TBF 19.5.1 Site: position = -259 score = 95.32 sequence = TTTACCCCACAGAGG... Gene: Kole_0108: Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) |
| lysA |
Gene: TM1517: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: TRQ2_1411: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: CTN_0976: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Tpet_1275: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Tnap_1292: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Tlet_1265: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: THA_1325: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Tmel_1043: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Fnod_0425: Diaminopimelate decarboxylase (EC 4.1.1.20) |
2
Petrotoga mobilis SJ95 Gene: Pmob_0477: Diaminopimelate decarboxylase (EC 4.1.1.20) Gene: Pmob_1225: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Gene: Kole_0871: Diaminopimelate decarboxylase (EC 4.1.1.20) |
Diaminopimelate decarboxylase (EC 4.1.1.20) |
| dapA |
Gene: TM1521: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: TRQ2_1415: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: CTN_0972: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Tpet_1271: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Tnap_1288: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Tlet_0733: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: THA_172: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Tmel_1875: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Fnod_0072: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Pmob_1224: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Gene: Kole_0106: Dihydrodipicolinate synthase (EC 4.2.1.52) |
Dihydrodipicolinate synthase (EC 4.2.1.52) |
| dapB |
Gene: TM1520: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: TRQ2_1414: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: CTN_0973: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Tpet_1272: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Tnap_1289: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Tlet_0732: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: THA_173: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Tmel_1876: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Fnod_0073: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Pmob_1223: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Gene: Kole_0105: Dihydrodipicolinate reductase (EC 1.3.1.26) |
Dihydrodipicolinate reductase (EC 1.3.1.26) |
| dapD |
Gene: TM1519: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: TRQ2_1413: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: CTN_0974: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Tpet_1273: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Tnap_1290: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Tlet_1948: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: THA_174: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Tmel_1877: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Fnod_0074: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Pmob_1222: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
Gene: Kole_0104: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) |
| lysC |
Gene: TM1518: Aspartokinase (EC 2.7.2.4) |
Gene: TRQ2_1412: Aspartokinase (EC 2.7.2.4) |
Gene: CTN_0975: Aspartokinase (EC 2.7.2.4) |
Gene: Tpet_1274: Aspartokinase (EC 2.7.2.4) |
Gene: Tnap_1291: Aspartokinase (EC 2.7.2.4) |
Gene: Tlet_0731: Aspartokinase (EC 2.7.2.4) |
Gene: THA_175: Aspartokinase (EC 2.7.2.4) |
Gene: Tmel_1878: Aspartokinase (EC 2.7.2.4) |
Gene: Fnod_0075: Aspartokinase (EC 2.7.2.4) |
Gene: Pmob_1221: Aspartokinase (EC 2.7.2.4) |
Gene: Kole_0103: Aspartokinase (EC 2.7.2.4) |
Aspartokinase (EC 2.7.2.4) |
| argD |
|
|
|
|
|
|
Gene: THA_176: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Tmel_1879: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Fnod_0076: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Pmob_1220: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Kole_0102: Acetylornithine aminotransferase (EC 2.6.1.11) |
Acetylornithine aminotransferase (EC 2.6.1.11) |
| dapL |
Gene: TM1516: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: TRQ2_1410: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: CTN_0977: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Tpet_1276: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Tnap_1293: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
|
Gene: THA_1326: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Tmel_1044: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Fnod_0081: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Pmob_1219: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
Gene: Kole_0532: N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
N-acetyl-L,L-diaminopimelate deacetylase (EC 3.5.1.47) |
| dapF |
Gene: TM1522: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: TRQ2_1416: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: CTN_0971: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: Tpet_1270: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: Tnap_1287: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: Tlet_1949: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: THA_171: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: Tmel_1874: Diaminopimelate epimerase (EC 5.1.1.7) |
Gene: Fnod_0071: Diaminopimelate epimerase (EC 5.1.1.7) |
|
Gene: Kole_0107: Diaminopimelate epimerase (EC 5.1.1.7) |
Diaminopimelate epimerase (EC 5.1.1.7) |
| THA_177 |
|
|
|
|
|
|
Gene: THA_177: lipase/acylhydrolase, GDSL family |
|
|
|
|
lipase/acylhydrolase, GDSL family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |