Regulog GlcC - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Glycolate utilization
Effector:	Glycolate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

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Member of regulog collections

By taxonomy - Various betaproteobacteria
By trascription factor - GlcC
By TF family - GntR/Others
By effector - Glycolate
By pathway - Glycolate utilization

Statistics of regulated genes
Genome	Genes	Operons
Azoarcus sp. EbN1	4	1
Thauera sp. MZ1T
Dechloromonas aromatica RCB
Nitrosomonas europaea ATCC 19718	3	1
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472
Neisseria meningitidis MC58
Laribacter hongkongensis HLHK9
Methylobacillus flagellatus KT
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
glcC	* Azoarcus sp. EbN1 Site: position = -130 score = 4.21869 sequence = AGTTGTCAGACAAAT Gene: ebA4487: Glycolate utilization operon transcriptional regulator, GntR family	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Glycolate utilization operon transcriptional regulator, GntR family
glcD	Azoarcus sp. EbN1 Gene: ebA4490: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Thauera sp. MZ1T Gene: Tmz1t_1637: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Dechloromonas aromatica RCB Gene: Daro_3315: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Nitrosomonas europaea ATCC 19718 Gene: NE0675: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0173: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Thiobacillus denitrificans Gene: Tbd_0047: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE	Azoarcus sp. EbN1 Gene: ebA4491: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Thauera sp. MZ1T Gene: Tmz1t_1638: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Dechloromonas aromatica RCB Gene: Daro_3314: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	* Nitrosomonas europaea ATCC 19718 Site: position = -118 score = 3.64645 sequence = ACTGCTCAATCCAGG Gene: NE0674: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0174: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Thiobacillus denitrificans Gene: Tbd_0046: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF	Azoarcus sp. EbN1 Gene: ebA4492: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Thauera sp. MZ1T Gene: Tmz1t_1639: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Dechloromonas aromatica RCB Gene: Daro_3313: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Nitrosomonas europaea ATCC 19718 Gene: NE0673: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0175: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Thiobacillus denitrificans Gene: Tbd_0044: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GlcC - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --