Regulog GlcC - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Glycolate utilization
Effector:	Glycolate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - GlcC
By TF family - GntR/Others
By effector - Glycolate
By pathway - Glycolate utilization

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396
Marinobacter aqueolei	5	2
Marinobacter sp. ELB17	8	2
Oceanobacter sp. RED65
Oceanospirillum sp. MED92	4	2
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
lldE	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	* Oceanospirillum sp. MED92 Site: position = -154 score = 4.95289 sequence = TCTTGGTCAGACCAGTT Gene: MED92_02414: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldF	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92 Gene: MED92_02409: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
lldG	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92 Gene: MED92_02404: L-lactate dehydrogenase, subunit LldG	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	L-lactate dehydrogenase, subunit LldG

CRON 2.
glcP	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	* Marinobacter sp. ELB17 Site: position = -165 score = 5.59504 sequence = AACTGGTCTGACCAGCA Site: position = -260 score = 5.75693 sequence = AACTGGTCAGACCAGCT Gene: MELB17_21740: Predicted TRAP-type glycolate transport system, periplasmic component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Predicted TRAP-type glycolate transport system, periplasmic component
glcQ	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_21745: Predicted TRAP-type glycolate transport system, small permease component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Predicted TRAP-type glycolate transport system, small permease component
glcM	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17 Gene: MELB17_21750: Predicted TRAP-type glycolate transport system, large permease component	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Predicted TRAP-type glycolate transport system, large permease component
glcG	Hahella chejuensis KCTC 2396	* Marinobacter aqueolei Site: position = -215 score = 5.59504 sequence = TGCTGGTCTGACCAGTT Site: position = -100 score = 5.99292 sequence = AACTGGTCGGACCAGTA Gene: Maqu_3305: Hypothetical protein GlcG in glycolate utilization operon	Marinobacter sp. ELB17 Gene: MELB17_21755: Hypothetical protein GlcG in glycolate utilization operon	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043 Gene: Csal_2690: Hypothetical protein GlcG in glycolate utilization operon	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Hypothetical protein GlcG in glycolate utilization operon
glcD	Hahella chejuensis KCTC 2396 Gene: HCH_05806: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Marinobacter aqueolei Gene: Maqu_3304: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Marinobacter sp. ELB17 Gene: MELB17_21760: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043 Gene: Csal_2687: Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD
glcE	Hahella chejuensis KCTC 2396 Gene: HCH_05805: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Marinobacter aqueolei Gene: Maqu_3303: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Marinobacter sp. ELB17 Gene: MELB17_21765: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043 Gene: Csal_2688: Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE
glcF	Hahella chejuensis KCTC 2396 Gene: HCH_05804: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Marinobacter aqueolei Gene: Maqu_3302: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Marinobacter sp. ELB17 Gene: MELB17_21770: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043 Gene: Csal_2689: Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF

CRON 3.
glcC	Hahella chejuensis KCTC 2396	* Marinobacter aqueolei Site: position = -140 score = 5.99292 sequence = TACTGGTCCGACCAGTT Site: position = -25 score = 5.59504 sequence = AACTGGTCAGACCAGCA Gene: Maqu_3306: Glycolate utilization operon transcriptional activator GlcC	* Marinobacter sp. ELB17 Site: position = -89 score = 5.59504 sequence = TGCTGGTCAGACCAGTT Site: position = 6 score = 5.75693 sequence = AGCTGGTCTGACCAGTT Gene: MELB17_21735: Glycolate utilization operon transcriptional activator GlcC	Oceanobacter sp. RED65	* Oceanospirillum sp. MED92 Site: position = -43 score = 4.95289 sequence = AACTGGTCTGACCAAGA Gene: MED92_02419: Glycolate utilization operon transcriptional activator GlcC	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Glycolate utilization operon transcriptional activator GlcC

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GlcC - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --