Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LldR - Desulfuromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Lactate utilization
Effector: L-lactate
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Geobacter metallireducens GS-15
Geobacter sulfurreducens PCA 5 2
Geobacter uraniumreducens Rf4 7 3
Geobacter sp. FRC-32
Geobacter sp. M21 8 2
Geobacter lovleyi SZ
Pelobacter propionicus DSM 2379 6 4
Pelobacter carbinolicus str. DSM 2380
Desulfuromonas acetoxidans DSM 684
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldP
 
Geobacter metallireducens GS-15
*
Geobacter sulfurreducens PCA

Site:
position = -126
score = 5.08214
sequence = AGTTGGTATGACAACTA

Site:
position = -235
score = 5.40064
sequence = AAGTTGTAATACCAACT

Gene: GSU1622: L-lactate permease
*2
Geobacter uraniumreducens Rf4

Site:
position = -233
score = 3.73302
sequence = AAAATGTATAACCACAT

Site:
position = -125
score = 5.57348
sequence = AATTGGTAATACAACTT

Gene: Gura_0154: L-lactate permease

Site:
position = -195
score = 5.18752
sequence = AAATGGTAATACCAACA

Site:
position = -303
score = 4.71065
sequence = AAATTGTAATACCATAT

Gene: Gura_2200: L-lactate permease
 
Geobacter sp. FRC-32
*
Geobacter sp. M21

Site:
position = -276
score = 4.02106
sequence = AATAGATATGACCAAAT

Site:
position = -168
score = 4.55081
sequence = AATTGGCCTGACCAAAA

Gene: GM21_1316: L-lactate permease
 
Geobacter lovleyi SZ
*
Pelobacter propionicus DSM 2379

Site:
position = -65
score = 4.75449
sequence = AATTGGTAATGCAAGTT

Site:
position = -322
score = 3.84834
sequence = AAGTGGTAAGACCTTCG

Gene: Ppro_2735: L-lactate permease
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
L-lactate permease
GM21_1317
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1317: LrgA family protein
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
LrgA family protein
GM21_1318
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA
 
Geobacter uraniumreducens Rf4
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1318: LrgB family protein
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
LrgB family protein
glcD
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA

Gene: GSU1623: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD
 
Geobacter uraniumreducens Rf4

Gene: Gura_2199: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1319: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD
 
Geobacter lovleyi SZ
*
Pelobacter propionicus DSM 2379

Site:
position = -114
score = 5.44953
sequence = AATTGGTAATACAACTA

Gene: Ppro_2540: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcD
glcF
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA

Gene: GSU1624: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Geobacter uraniumreducens Rf4

Gene: Gura_2198: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1320: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379

Gene: Ppro_2541: Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Predicted glycolate dehydrogenase, 2-subunit type (EC 1.1.99.14), iron-sulfur subunit GlcF
lldR
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA

Gene: GSU1626: Lactate-responsive regulator LldR, GntR family
 2
Geobacter uraniumreducens Rf4

Gene: Gura_0158: Lactate-responsive regulator LldR, GntR family

Gene: Gura_2197: Lactate-responsive regulator LldR, GntR family
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1321: Lactate-responsive regulator LldR, GntR family
 
Geobacter lovleyi SZ
*
Pelobacter propionicus DSM 2379

Site:
position = -158
score = 4.71394
sequence = ATGTGGTATTACAAGTT

Gene: Ppro_2670: Lactate-responsive regulator LldR, GntR family
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
Lactate-responsive regulator LldR, GntR family
 
CRON 2.
lldG
 
Geobacter metallireducens GS-15
*
Geobacter sulfurreducens PCA

Site:
position = -3
score = 5.08214
sequence = TAGTTGTCATACCAACT

Site:
position = 106
score = 5.40064
sequence = AGTTGGTATTACAACTT

Gene: GSU1621: L-lactate dehydrogenase, hypothetical protein subunit LldG
*
Geobacter uraniumreducens Rf4

Site:
position = -231
score = 3.73302
sequence = ATGTGGTTATACATTTT

Site:
position = -339
score = 5.57348
sequence = AAGTTGTATTACCAATT

Gene: Gura_0153: L-lactate dehydrogenase, hypothetical protein subunit LldG
 
Geobacter sp. FRC-32
*
Geobacter sp. M21

Site:
position = -280
score = 4.55081
sequence = TTTTGGTCAGGCCAATT

Site:
position = -172
score = 4.02106
sequence = ATTTGGTCATATCTATT

Gene: GM21_1315: L-lactate dehydrogenase, hypothetical protein subunit LldG
 
Geobacter lovleyi SZ
*
Pelobacter propionicus DSM 2379

Site:
position = 0
score = 4.68032
sequence = ATGTGGTCATACCATCT

Site:
position = -144
score = 4.93743
sequence = AATTGGTAATACCAGAT

Gene: Ppro_3136: L-lactate dehydrogenase, hypothetical protein subunit LldG
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
L-lactate dehydrogenase, hypothetical protein subunit LldG
lldEF
 
Geobacter metallireducens GS-15
 
Geobacter sulfurreducens PCA

Gene: GSU1620: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Geobacter uraniumreducens Rf4

Gene: Gura_0152: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Geobacter sp. FRC-32
 
Geobacter sp. M21

Gene: GM21_1314: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Geobacter lovleyi SZ
 
Pelobacter propionicus DSM 2379

Gene: Ppro_3135: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Pelobacter carbinolicus str. DSM 2380
 
Desulfuromonas acetoxidans DSM 684
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE / L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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