Regulog LldR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Lactate utilization
Effector:	L-lactate
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - LldR
By TF family - GntR/Others
By effector - L-lactate
By pathway - Lactate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1	3	1
Delftia acidovorans SPH-1	4	1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236	4	2
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1
Leptothrix cholodnii SP-6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
lldE	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -53 score = 5.73152 sequence = TATTGGTATTACCAATT Gene: Rfer_0201: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldG	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0200: L-lactate dehydrogenase, subunit LldG	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	L-lactate dehydrogenase, subunit LldG
lldF	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0199: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF

CRON 2.
lldP	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -259 score = 6.08845 sequence = AATTGGTATTACCAATT Site: position = -162 score = 5.44849 sequence = TATTGGTAATACCAATT Gene: CtesDRAFT_4930: L-lactate permease	* Delftia acidovorans SPH-1 Site: position = -309 score = 6.0295 sequence = AATTGGTCTGACCAATA Site: position = -183 score = 5.9423 sequence = AATTGGTTGGACCAATT Gene: Daci_3344: L-lactate permease	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	L-lactate permease
lldR	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4929: Lactate-responsive regulator LldR in Enterobacteria, GntR family	Delftia acidovorans SPH-1 Gene: Daci_3345: Lactate-responsive regulator LldR in Enterobacteria, GntR family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	* Rhodoferax ferrireducens DSM 15236 Site: position = -26 score = 6.34746 sequence = AATTGGTCTTACCAATT Gene: Rfer_0202: Lactate-responsive regulator LldR in Enterobacteria, GntR family	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Lactate-responsive regulator LldR in Enterobacteria, GntR family
lldD	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3519: L-lactate dehydrogenase (EC 1.1.2.3)	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4928: L-lactate dehydrogenase (EC 1.1.2.3)	Delftia acidovorans SPH-1 Gene: Daci_3346: L-lactate dehydrogenase (EC 1.1.2.3)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	L-lactate dehydrogenase (EC 1.1.2.3)
dld	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_3347: D-lactate dehydrogenase	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	D-lactate dehydrogenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LldR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --