Regulog LldR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Lactate utilization |
| Effector: | L-lactate |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - LldR
- By TF family - GntR/Others
- By effector - L-lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 3 | 1 |
| Delftia acidovorans SPH-1 | 4 | 1 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | 4 | 2 |
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| lldE |
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Rhodoferax ferrireducens DSM 15236 Site: position = -53 score = 5.73152 sequence = TATTGGTATTACCAATT Gene: Rfer_0201: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
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L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
| lldG |
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Gene: Rfer_0200: L-lactate dehydrogenase, subunit LldG |
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L-lactate dehydrogenase, subunit LldG |
| lldF |
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Gene: Rfer_0199: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
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L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
| CRON 2. | ||||||||||||
| lldP |
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Comamonas testosteroni KF-1 Site: position = -259 score = 6.08845 sequence = AATTGGTATTACCAATT Site: position = -162 score = 5.44849 sequence = TATTGGTAATACCAATT Gene: CtesDRAFT_4930: L-lactate permease |
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Delftia acidovorans SPH-1 Site: position = -309 score = 6.0295 sequence = AATTGGTCTGACCAATA Site: position = -183 score = 5.9423 sequence = AATTGGTTGGACCAATT Gene: Daci_3344: L-lactate permease |
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L-lactate permease |
| lldR |
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Gene: CtesDRAFT_4929: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
Gene: Daci_3345: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
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Rhodoferax ferrireducens DSM 15236 Site: position = -26 score = 6.34746 sequence = AATTGGTCTTACCAATT Gene: Rfer_0202: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
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Lactate-responsive regulator LldR in Enterobacteria, GntR family |
| lldD |
Gene: Aave_3519: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: CtesDRAFT_4928: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: Daci_3346: L-lactate dehydrogenase (EC 1.1.2.3) |
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L-lactate dehydrogenase (EC 1.1.2.3) |
| dld |
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Gene: Daci_3347: D-lactate dehydrogenase |
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D-lactate dehydrogenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |