Regulog LldR - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor |
| Biological process: | Lactate utilization |
| Effector: | L-lactate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - LldR
- By TF family - GntR/Others
- By effector - L-lactate
- By pathway - Lactate utilization
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 4 | 2 |
| Pseudomonas entomophila L48 | 4 | 2 |
| Pseudomonas putida KT2440 | 4 | 2 |
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Pseudomonas fluorescens Pf-5 | 6 | 2 |
| Pseudomonas mendocina ymp | 4 | 2 |
| Pseudomonas stutzeri A1501 | 6 | 2 |
| Azotobacter vinelandii AvOP | 6 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| lldR |
*
Pseudomonas aeruginosa PAO1 Site: position = -219 score = 6.09612 sequence = AATTGGTAAGACCAATT Gene: PA4769: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
*
Pseudomonas entomophila L48 Site: position = -291 score = 6.09612 sequence = AATTGGTAAGACCAATT Gene: PSEEN0769: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
*
Pseudomonas putida KT2440 Site: position = -211 score = 6.09612 sequence = AATTGGTAAGACCAATT Gene: PP4734: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -210 score = 6.09612 sequence = AATTGGTAAGACCAATT Gene: PFL_0818: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
*
Pseudomonas mendocina ymp Site: position = -29 score = 3.94256 sequence = GTCTGGTCAAACCAATG Site: position = -175 score = 6.26356 sequence = AATTGGTAATACCAATT Gene: Pmen_3633: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
*
Pseudomonas stutzeri A1501 Site: position = -161 score = 5.51009 sequence = AAGTGGTAAGACCAATT Site: position = -28 score = 4.49074 sequence = GACTGGTAAGACCATTT Gene: PST_3335: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
*
Azotobacter vinelandii AvOP Site: position = -222 score = 6.26356 sequence = AATTGGTAATACCAATT Site: position = -42 score = 4.111 sequence = AACTGGTCAAGCCAGTA Gene: Avin_43060: Lactate-responsive regulator LldR in Enterobacteria, GntR family |
Lactate-responsive regulator LldR in Enterobacteria, GntR family |
| CRON 2. | |||||||||
| lldP |
*
Pseudomonas aeruginosa PAO1 Site: position = -126 score = 6.47528 sequence = AATTGGTCTTACCAATT Gene: PA4770: L-lactate permease |
*
Pseudomonas entomophila L48 Site: position = -63 score = 6.47528 sequence = AATTGGTCTTACCAATT Gene: PSEEN0768: L-lactate permease |
*
Pseudomonas putida KT2440 Site: position = -62 score = 6.47528 sequence = AATTGGTCTTACCAATT Gene: PP4735: L-lactate permease |
|
*
Pseudomonas fluorescens Pf-5 Site: position = -68 score = 6.47528 sequence = AATTGGTCTTACCAATT Gene: PFL_0817: L-lactate permease |
*
Pseudomonas mendocina ymp Site: position = -139 score = 6.37314 sequence = AATTGGTATTACCAATT Site: position = -285 score = 3.60093 sequence = CATTGGTTTGACCAGAC Gene: Pmen_3634: L-lactate permease |
*
Pseudomonas stutzeri A1501 Site: position = -125 score = 5.86737 sequence = AATTGGTCTTACCACTT Site: position = -258 score = 5.17052 sequence = AAATGGTCTTACCAGTC Gene: PST_3336: L-lactate permease |
*
Azotobacter vinelandii AvOP Site: position = -149 score = 6.37314 sequence = AATTGGTATTACCAATT Site: position = -329 score = 4.02328 sequence = TACTGGCTTGACCAGTT Gene: Avin_43070: L-lactate permease |
L-lactate permease |
| lldE |
|
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Gene: PFL_0816: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
|
Gene: PST_3337: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
Gene: Avin_43080: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE |
| lldF |
|
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Gene: PFL_0815: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
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Gene: PST_3338: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
Gene: Avin_43090: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
L-lactate dehydrogenase, iron-sulfur cluster-binding subunit LldF |
| lldG |
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Gene: PFL_0814: L-lactate dehydrogenase, subunit LldG |
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Gene: PST_3339: L-lactate dehydrogenase, subunit LldG |
Gene: Avin_43100: L-lactate dehydrogenase, subunit LldG |
L-lactate dehydrogenase, subunit LldG |
| dld |
Gene: PA4772: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: PSEEN0766: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: PP4737: D-Lactate dehydrogenase (EC 1.1.2.5) |
|
Gene: PFL_0813: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: Pmen_3636: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: PST_3340: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: Avin_43110: D-Lactate dehydrogenase (EC 1.1.2.5) |
D-Lactate dehydrogenase (EC 1.1.2.5) |
| lldD |
Gene: PA4771: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: PSEEN0767: L-lactate dehydrogenase (EC 1.1.2.3) |
Gene: PP4736: L-lactate dehydrogenase (EC 1.1.2.3) |
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Gene: Pmen_3635: L-lactate dehydrogenase (EC 1.1.2.3) |
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L-lactate dehydrogenase (EC 1.1.2.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |