Regulog FadR - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - FadR
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | 1 | 1 |
| Psychromonas sp. CNPT3 | 1 | 1 |
| Moritella sp. PE36 | 3 | 2 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 4 | 3 |
| Aeromonas salmonicida subsp. salmonicida A449 | 4 | 3 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fadI |
|
|
*2
Moritella sp. PE36 Gene: PE36_12372: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Site: position = -42 score = 5.21185 sequence = ATGAGGTCTGACCTCTT Gene: PE36_17987: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -50 score = 5.3124 sequence = ATGAGGTCAGACCTCTC Gene: AHA_2153: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -39 score = 5.37738 sequence = ATGAGGTCAGACCTCTG Gene: ASA_2146: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
FadI component of anaerobic fatty acid oxidation complex |
| fadJ |
|
|
Gene: PE36_17982: FadJ component of anaerobic fatty acid oxidation complex |
Gene: AHA_2154: FadJ component of anaerobic fatty acid oxidation complex |
Gene: ASA_2145: FadJ component of anaerobic fatty acid oxidation complex |
|
FadJ component of anaerobic fatty acid oxidation complex |
| CRON 2. | |||||||
| fadL |
|
|
|
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -148 score = 4.84434 sequence = CACTGGTCTGATTTCTT Gene: AHA_2145: Long-chain fatty acid transport protein precursor |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -148 score = 4.84434 sequence = CACTGGTCTGATTTCTT Gene: ASA_2156: Long-chain fatty acid transport protein precursor |
|
Long-chain fatty acid transport protein precursor |
| CRON 3. | |||||||
| fadE |
|
|
*
Moritella sp. PE36 Site: position = -54 score = 5.20811 sequence = TTCTGGTCTGACCTCTG Gene: PE36_21579: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -70 score = 5.75723 sequence = AACAGGTCAGACCTCTG Gene: AHA_1573: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -71 score = 5.75723 sequence = AACAGGTCAGACCTCTG Gene: ASA_2784: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
|
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| CRON 4. | |||||||
| fabB |
*
Psychromonas ingrahamii 37 Site: position = -173 score = 4.96939 sequence = AACTGATCAGACCAGTG Gene: Ping_1995: fatty oxidation complex, alpha subunit FadB |
*
Psychromonas sp. CNPT3 Site: position = -170 score = 4.41957 sequence = TGCTGATCAGACCAGTG Gene: PCNPT3_07205: fatty oxidation complex, alpha subunit FadB |
Gene: PE36_02414: fatty oxidation complex, alpha subunit FadB |
Gene: AHA_1920: fatty oxidation complex, alpha subunit FadB |
Gene: ASA_2365: fatty oxidation complex, alpha subunit FadB |
Gene: Tola_1573: fatty oxidation complex, alpha subunit FadB |
fatty oxidation complex, alpha subunit FadB |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |