Regulog NikR - Desulfuromonadales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/delta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Desulfuromonadales
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Geobacter metallireducens GS-15 | 3 | 1 |
| Geobacter sulfurreducens PCA | 3 | 1 |
| Geobacter uraniumreducens Rf4 | 4 | 2 |
| Geobacter sp. FRC-32 | ||
| Geobacter sp. M21 | 3 | 1 |
| Geobacter lovleyi SZ | 3 | 1 |
| Pelobacter propionicus DSM 2379 | 3 | 1 |
| Pelobacter carbinolicus str. DSM 2380 | ||
| Desulfuromonas acetoxidans DSM 684 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nikMN |
*
Geobacter metallireducens GS-15 Site: position = -62 score = 7.67061 sequence = GTGTTAC-(13)-GTAACAC Gene: Gmet_2441: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Geobacter sulfurreducens PCA Site: position = -56 score = 7.63177 sequence = GTGTTAC-(14)-GTGACAC Gene: GSU1279: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*2
Geobacter uraniumreducens Rf4 Site: position = -48 score = 6.57491 sequence = GTGCTAC-(13)-GTGTTAC Gene: Gura_0780: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter Site: position = -67 score = 6.46722 sequence = GTGTTAC-(13)-GTGCTAC Gene: Gura_2762: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
2
Geobacter sp. FRC-32 Gene: Geob_0946: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter Gene: Geob_2474: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Geobacter sp. M21 Site: position = -66 score = 6.46722 sequence = GTGTTAC-(13)-GTGCTAC Gene: GM21_2002: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Geobacter lovleyi SZ Site: position = -38 score = 6.44359 sequence = GTGCTAC-(13)-GTGGCAC Gene: Glov_2769: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
*
Pelobacter propionicus DSM 2379 Site: position = -43 score = 5.99449 sequence = ATGCTAC-(13)-GTGACAC Gene: Ppro_1805: Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
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Substrate-specific component NikM of nickel ECF transporter / Additional substrate-specific component NikN of nickel ECF transporter |
| nikQ |
Gene: Gmet_2440: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: GSU1280: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: Gura_2761: Transmembrane component NikQ of energizing module of nickel ECF transporter |
2
Geobacter sp. FRC-32 Gene: Geob_3338: Transmembrane component NikQ of energizing module of nickel ECF transporter Gene: Geob_2475: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: GM21_2003: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: Glov_2768: Transmembrane component NikQ of energizing module of nickel ECF transporter |
Gene: Ppro_1806: Transmembrane component NikQ of energizing module of nickel ECF transporter |
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Transmembrane component NikQ of energizing module of nickel ECF transporter |
| nikO |
Gene: Gmet_2439: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: GSU1281: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: Gura_2760: ATPase component NikO of energizing module of nickel ECF transporter |
2
Geobacter sp. FRC-32 Gene: Geob_3337: ATPase component NikO of energizing module of nickel ECF transporter Gene: Geob_2476: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: GM21_2004: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: Glov_2767: ATPase component NikO of energizing module of nickel ECF transporter |
Gene: Ppro_1807: ATPase component NikO of energizing module of nickel ECF transporter |
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ATPase component NikO of energizing module of nickel ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |