Regulog NikR - Rhizobiales
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Rhizobiales
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Sinorhizobium meliloti 1021 | ||
| Rhizobium sp. NGR234 | ||
| Rhizobium leguminosarum bv. viciae 3841 | ||
| Rhizobium etli CFN 42 | ||
| Agrobacterium tumefaciens str. C58 (Cereon) | ||
| Mesorhizobium sp. BNC1 | ||
| Mesorhizobium loti MAFF303099 | ||
| Brucella melitensis 16M | 6 | 2 |
| Bartonella quintana str. Toulouse | ||
| Rhodopseudomonas palustris CGA009 | 2 | 2 |
| Bradyrhizobium japonicum USDA 110 | 3 | 2 |
| Bradyrhizobium sp. BTAi1 | 5 | 5 |
| Nitrobacter winogradskyi Nb-255 | ||
| Azorhizobium caulinodans ORS 571 | ||
| Xanthobacter autotrophicus Py2 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| nikR |
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Brucella melitensis 16M Site: position = -180 score = 7.10095 sequence = GTATGAT-(14)-ATCATAT Gene: BMEII0486: Nickel responsive regulator NikR, CopG family |
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Rhodopseudomonas palustris CGA009 Site: position = -59 score = 7.66225 sequence = GTATGAC-(14)-TTCATAC Gene: RPA4756: Nickel responsive regulator NikR, CopG family |
Gene: bll0699: Nickel responsive regulator NikR, CopG family |
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Bradyrhizobium sp. BTAi1 Site: position = -62 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: BBta_6191: Nickel responsive regulator NikR, CopG family |
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Nickel responsive regulator NikR, CopG family |
| CRON 2. | ||||||||||||||||
| omp_Ni-2 |
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Bradyrhizobium sp. BTAi1 Site: position = -80 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: BBta_3362: Nickel-regulated outer membrane transporter, TonB-dependent family |
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Nickel-regulated outer membrane transporter, TonB-dependent family |
| CRON 3. | ||||||||||||||||
| hoxN2 |
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Bradyrhizobium sp. BTAi1 Site: position = -85 score = 7.66225 sequence = GTATGAC-(14)-TTCATAC Gene: BBta_3358: high-affinity nickel-transporter, NiCoT family |
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high-affinity nickel-transporter, NiCoT family |
| CRON 4. | ||||||||||||||||
| nikA |
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Brucella melitensis 16M Site: position = -57 score = 7.10095 sequence = ATATGAT-(14)-ATCATAC Gene: BMEII0487: Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
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Nickel ABC transporter, periplasmic nickel-binding protein NikA (TC 3.A.1.5.3) |
| nikB |
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Gene: BMEII0488: Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikB (TC 3.A.1.5.3) |
| nikC |
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Gene: BMEII0489: Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
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Nickel transport system permease protein NikC (TC 3.A.1.5.3) |
| nikD |
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Gene: BMEII0490: Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikD (TC 3.A.1.5.3) |
| nikE |
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Gene: BMEII0491: Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
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Nickel transport ATP-binding protein NikE (TC 3.A.1.5.3) |
| CRON 5. | ||||||||||||||||
| hoxN |
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*2
Bradyrhizobium japonicum USDA 110 Site: position = 22 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: bll6910: high-affinity nickel-transporter, NiCoT family Site: position = 13 score = 7.83304 sequence = GTATGAC-(14)-ATCATAC Gene: bll6949: high-affinity nickel-transporter, NiCoT family |
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Bradyrhizobium sp. BTAi1 Site: position = -2 score = 6.85059 sequence = GTATGAC-(14)-ATCATCC Gene: BBta_1993: high-affinity nickel-transporter, NiCoT family |
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high-affinity nickel-transporter, NiCoT family |
| omp_Ni |
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Rhodopseudomonas palustris CGA009 Site: position = -89 score = 7.66225 sequence = GTATGAA-(14)-GTCATAC Gene: RPA4757: Predicted outer membrane nickel transporter, TonB-dependent family |
Gene: bll6948: Predicted outer membrane nickel transporter, TonB-dependent family |
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Bradyrhizobium sp. BTAi1 Site: position = -179 score = 7.74979 sequence = GTATGAT-(14)-ATCATAC Gene: BBta_6192: Predicted outer membrane nickel transporter, TonB-dependent family |
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Predicted outer membrane nickel transporter, TonB-dependent family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |