Regulog NikR - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - NikR
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | ||
| Thauera sp. MZ1T | ||
| Dechloromonas aromatica RCB | 2 | 1 |
| Nitrosomonas europaea ATCC 19718 | ||
| Nitrosospira multiformis ATCC 25196 | 2 | 1 |
| Thiobacillus denitrificans | ||
| Chromobacterium violaceum ATCC 12472 | ||
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | ||
| Methylobacillus flagellatus KT | ||
| Methylotenera mobilis JLW8 | ||
| Methylophilales bacterium HTCC2181 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| hoxN |
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Dechloromonas aromatica RCB Site: position = -35 score = 7.40822 sequence = GTATGAA-(13)-TTCATAC Gene: Daro_3945: high-affinity nickel-transporter, NiCoT family |
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high-affinity nickel-transporter, NiCoT family |
| omp_Ni |
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Gene: Daro_3944: Predicted outer membrane nickel transporter, TonB-dependent family |
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Nitrosospira multiformis ATCC 25196 Site: position = -88 score = 6.35652 sequence = GTATTAC-(13)-TTCCTAC Gene: Nmul_A1233: Predicted outer membrane nickel transporter, TonB-dependent family |
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Predicted outer membrane nickel transporter, TonB-dependent family |
| nikR |
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Gene: Nmul_A1234: Nickel responsive regulator NikR, CopG family |
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Nickel responsive regulator NikR, CopG family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |