Regulog NikR - Various betaproteobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By trascription factor - NikR
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Azoarcus sp. EbN1
Thauera sp. MZ1T
Dechloromonas aromatica RCB	2	1
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196	2	1
Thiobacillus denitrificans
Chromobacterium violaceum ATCC 12472
Neisseria meningitidis MC58
Laribacter hongkongensis HLHK9
Methylobacillus flagellatus KT
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
hoxN	Azoarcus sp. EbN1	Thauera sp. MZ1T	* Dechloromonas aromatica RCB Site: position = -35 score = 7.40822 sequence = GTATGAA-(13)-TTCATAC Gene: Daro_3945: high-affinity nickel-transporter, NiCoT family	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	high-affinity nickel-transporter, NiCoT family
omp_Ni	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB Gene: Daro_3944: Predicted outer membrane nickel transporter, TonB-dependent family	Nitrosomonas europaea ATCC 19718	* Nitrosospira multiformis ATCC 25196 Site: position = -88 score = 6.35652 sequence = GTATTAC-(13)-TTCCTAC Gene: Nmul_A1233: Predicted outer membrane nickel transporter, TonB-dependent family	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted outer membrane nickel transporter, TonB-dependent family
nikR	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A1234: Nickel responsive regulator NikR, CopG family	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Nickel responsive regulator NikR, CopG family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Various betaproteobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --