Regulog NikR - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 3 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - NikR
By TF family - NikR
By effector - Nickel ion, (Ni2+)
By pathway - Nickel homeostasis

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1	2	1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Methylibium petroleiphilum PM1	7	2
Leptothrix cholodnii SP-6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
omp_Ni-2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	* Methylibium petroleiphilum PM1 Site: position = -108 score = 6.98672 sequence = GTATGAG-(13)-ATCTTAC Gene: Mpe_A2798: Predicted outer membrane nickel transporter, TonB-dependent family	Leptothrix cholodnii SP-6	Predicted outer membrane nickel transporter, TonB-dependent family

CRON 2.
omp_Ni	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3624: Predicted outer membrane nickel transporter, TonB-dependent family	* Delftia acidovorans SPH-1 Site: position = -42 score = 7.40822 sequence = GTATGAA-(13)-TTCATAC Gene: Daci_3112: Predicted outer membrane nickel transporter, TonB-dependent family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	* Methylibium petroleiphilum PM1 Site: position = -76 score = 7.579 sequence = GTATGAA-(13)-ATCATAC Gene: Mpe_A2804: Predicted outer membrane nickel transporter, TonB-dependent family	Leptothrix cholodnii SP-6	Predicted outer membrane nickel transporter, TonB-dependent family
nikK	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3623: Additional periplasmic component NikK of nickel ECF transporter	Delftia acidovorans SPH-1 Gene: Daci_3113: Additional periplasmic component NikK of nickel ECF transporter	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A2803: Additional periplasmic component NikK of nickel ECF transporter	Leptothrix cholodnii SP-6	Additional periplasmic component NikK of nickel ECF transporter
nikN	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A2802: Additional substrate-specific component NikN of nickel ECF transporter	Leptothrix cholodnii SP-6	Additional substrate-specific component NikN of nickel ECF transporter
nikM	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A2801: Substrate-specific component NikM of nickel ECF transporter	Leptothrix cholodnii SP-6	Substrate-specific component NikM of nickel ECF transporter
nikQ	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A2800: Transmembrane component NikQ of energizing module of nickel ECF transporter	Leptothrix cholodnii SP-6	Transmembrane component NikQ of energizing module of nickel ECF transporter
nikO	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A2799: ATPase component NikO of energizing module of nickel ECF transporter	Leptothrix cholodnii SP-6	ATPase component NikO of energizing module of nickel ECF transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NikR - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --