Regulog NikR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NikR
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | 2 | 1 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | 7 | 2 |
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| omp_Ni-2 |
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Methylibium petroleiphilum PM1 Site: position = -108 score = 6.98672 sequence = GTATGAG-(13)-ATCTTAC Gene: Mpe_A2798: Predicted outer membrane nickel transporter, TonB-dependent family |
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Predicted outer membrane nickel transporter, TonB-dependent family |
| CRON 2. | ||||||||||||
| omp_Ni |
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Gene: CtesDRAFT_3624: Predicted outer membrane nickel transporter, TonB-dependent family |
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Delftia acidovorans SPH-1 Site: position = -42 score = 7.40822 sequence = GTATGAA-(13)-TTCATAC Gene: Daci_3112: Predicted outer membrane nickel transporter, TonB-dependent family |
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Methylibium petroleiphilum PM1 Site: position = -76 score = 7.579 sequence = GTATGAA-(13)-ATCATAC Gene: Mpe_A2804: Predicted outer membrane nickel transporter, TonB-dependent family |
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Predicted outer membrane nickel transporter, TonB-dependent family |
| nikK |
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Gene: CtesDRAFT_3623: Additional periplasmic component NikK of nickel ECF transporter |
Gene: Daci_3113: Additional periplasmic component NikK of nickel ECF transporter |
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Gene: Mpe_A2803: Additional periplasmic component NikK of nickel ECF transporter |
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Additional periplasmic component NikK of nickel ECF transporter |
| nikN |
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Gene: Mpe_A2802: Additional substrate-specific component NikN of nickel ECF transporter |
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Additional substrate-specific component NikN of nickel ECF transporter |
| nikM |
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Gene: Mpe_A2801: Substrate-specific component NikM of nickel ECF transporter |
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Substrate-specific component NikM of nickel ECF transporter |
| nikQ |
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Gene: Mpe_A2800: Transmembrane component NikQ of energizing module of nickel ECF transporter |
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Transmembrane component NikQ of energizing module of nickel ECF transporter |
| nikO |
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Gene: Mpe_A2799: ATPase component NikO of energizing module of nickel ECF transporter |
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ATPase component NikO of energizing module of nickel ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |