Regulog NikR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	NikR
Regulation mode:	repressor
Biological process:	Nickel homeostasis
Effector:	Nickel ion, (Ni2+)
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400	2	2
Burkholderia phymatum STM815

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
hoxN	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4 Gene: Bcep1808_5930: high-affinity nickel-transporter, NiCoT family	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -94 score = 6.44542 sequence = GTATGAT-(14)-GTATTAT Gene: Bxe_C0038: high-affinity nickel-transporter, NiCoT family	Burkholderia phymatum STM815	high-affinity nickel-transporter, NiCoT family

CRON 2.
nikR	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	* Burkholderia xenovorans LB400 Site: position = -74 score = 6.44542 sequence = ATAATAC-(14)-ATCATAC Gene: Bxe_C0039: Nickel responsive regulator NikR, CopG family	Burkholderia phymatum STM815	Nickel responsive regulator NikR, CopG family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --