Regulog NikR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NikR
- By taxonomy - Burkholderia
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | ||
| Burkholderia mallei ATCC 23344 | ||
| Burkholderia sp. 383 | ||
| Burkholderia cepacia AMMD | ||
| Burkholderia vietnamiensis G4 | ||
| Burkholderia glumae BGR1 | ||
| Burkholderia xenovorans LB400 | 2 | 2 |
| Burkholderia phymatum STM815 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| hoxN |
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Gene: Bcep1808_5930: high-affinity nickel-transporter, NiCoT family |
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Burkholderia xenovorans LB400 Site: position = -94 score = 6.44542 sequence = GTATGAT-(14)-GTATTAT Gene: Bxe_C0038: high-affinity nickel-transporter, NiCoT family |
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high-affinity nickel-transporter, NiCoT family |
| CRON 2. | |||||||||
| nikR |
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Burkholderia xenovorans LB400 Site: position = -74 score = 6.44542 sequence = ATAATAC-(14)-ATCATAC Gene: Bxe_C0039: Nickel responsive regulator NikR, CopG family |
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Nickel responsive regulator NikR, CopG family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |