Regulog TPP - Cyanobacteria
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Cyanothece sp. ATCC 51142 | 1 | 1 |
| Cyanothece sp. PCC 7425 | 1 | 1 |
| Cyanothece sp. PCC 8801 | 1 | 1 |
| Gloeobacter violaceus PCC 7421 | 1 | 1 |
| Microcystis aeruginosa NIES-843 | 1 | 1 |
| Nostoc sp. PCC 7120 | 1 | 1 |
| Prochlorococcus marinus str. MIT 9313 | 1 | 1 |
| Synechococcus elongatus PCC 7942 | 1 | 1 |
| Synechococcus sp. JA-3-3Ab | 1 | 1 |
| Synechococcus sp. PCC 7002 | 1 | 1 |
| Synechococcus sp. WH 8102 | 1 | 1 |
| Synechocystis sp. PCC 6803 | 1 | 1 |
| Thermosynechococcus elongatus BP-1 | 1 | 1 |
| Trichodesmium erythraeum IMS101 | 1 | 1 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| thiC |
*
Cyanothece sp. ATCC 51142 Site: position = -102 score = 67.78 sequence = TCCATAGCTAGGGGT... Gene: cce_3025: Phosphomethylpyrimidine synthase |
*
Cyanothece sp. PCC 7425 Site: position = -103 score = 68.29 sequence = GCTCAAGCTAGGGGT... Gene: Cyan7425_3220: Phosphomethylpyrimidine synthase |
*
Cyanothece sp. PCC 8801 Site: position = -106 score = 68.81 sequence = CTTATAGCTAGGGGT... Gene: PCC8801_2662: Phosphomethylpyrimidine synthase |
*
Gloeobacter violaceus PCC 7421 Site: position = -105 score = 55.49 sequence = GTTCACGCTGGGGGT... Gene: gvip148: Phosphomethylpyrimidine synthase |
*
Microcystis aeruginosa NIES-843 Site: position = -104 score = 65.39 sequence = GTCATAGCTAGGGGT... Gene: MAE_43400: Phosphomethylpyrimidine synthase |
*
Nostoc sp. PCC 7120 Site: position = -105 score = 59.09 sequence = ACATCCATGCTAGGG... Gene: all0982: Phosphomethylpyrimidine synthase |
*
Prochlorococcus marinus str. MIT 9313 Site: position = -147 score = 66.95 sequence = CAAAACACTAGGGGT... Gene: PMT0160: Phosphomethylpyrimidine synthase |
*
Synechococcus elongatus PCC 7942 Site: position = -216 score = 61.24 sequence = TTGAGCAGGCTAGGG... Gene: Synpcc7942_1096: Phosphomethylpyrimidine synthase |
*
Synechococcus sp. JA-3-3Ab Site: position = -107 score = 66.15 sequence = CACAACACGCTAGGA... Gene: CYA_0011: Phosphomethylpyrimidine synthase |
*
Synechococcus sp. PCC 7002 Site: position = -110 score = 68.27 sequence = TTGCCATAGCTAGGG... Gene: SYNPCC7002_A0831: Phosphomethylpyrimidine synthase |
*
Synechococcus sp. WH 8102 Site: position = -101 score = 69.9 sequence = AACACCACTAGGGGT... Gene: SYNW0140: Phosphomethylpyrimidine synthase |
*
Synechocystis sp. PCC 6803 Site: position = -102 score = 63.03 sequence = GCCATAGCTAGGGGT... Gene: slr0118: Phosphomethylpyrimidine synthase |
*
Thermosynechococcus elongatus BP-1 Site: position = -106 score = 62.71 sequence = CGACATGCTAGGGGT... Gene: null: Phosphomethylpyrimidine synthase |
*
Trichodesmium erythraeum IMS101 Site: position = -105 score = 69.4 sequence = CCCACTAAGCTAGGG... Gene: Tery_2464: Phosphomethylpyrimidine synthase |
Phosphomethylpyrimidine synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |