Regulog TPP - Ralstonia
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Ralstonia
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Cupriavidus taiwanensis | 6 | 1 |
| Ralstonia eutropha H16 | 6 | 1 |
| Ralstonia eutropha JMP134 | 5 | 1 |
| Ralstonia metallidurans CH34 | 5 | 1 |
| Ralstonia pickettii 12J | 5 | 1 |
| Ralstonia solanacearum GMI1000 | 3 | 1 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| thiC |
*
Cupriavidus taiwanensis Site: position = -201 score = 66.36 sequence = GGATGAAACAGGGGT... Gene: RALTA_A0179: Phosphomethylpyrimidine synthase |
*
Ralstonia eutropha H16 Site: position = -201 score = 66.46 sequence = GGATGAAACAGGGGT... Gene: H16_A0235: Phosphomethylpyrimidine synthase |
*
Ralstonia eutropha JMP134 Site: position = -202 score = 59.55 sequence = GGATGAAACAGGGGT... Gene: Reut_A0205: Phosphomethylpyrimidine synthase |
*
Ralstonia metallidurans CH34 Site: position = -228 score = 66.14 sequence = GGATGAAACAGGGGT... Gene: Rmet_0162: Phosphomethylpyrimidine synthase |
*
Ralstonia pickettii 12J Site: position = -200 score = 61.32 sequence = GGATGAAACAGGGGT... Gene: Rpic_3642: Phosphomethylpyrimidine synthase |
*
Ralstonia solanacearum GMI1000 Site: position = -196 score = 59.76 sequence = TTGGATGAAACAGGG... Gene: RSc0113: Phosphomethylpyrimidine synthase |
Phosphomethylpyrimidine synthase |
| thiO |
Gene: RALTA_A0180: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: H16_A0236: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Reut_A0206: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Rmet_0163: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Rpic_3643: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: RS00982: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
Gene: RALTA_A0181: Sulfur carrier protein ThiS |
Gene: H16_A0237: Sulfur carrier protein ThiS |
Gene: Reut_A0207: Sulfur carrier protein ThiS |
Gene: Rmet_0164: Sulfur carrier protein ThiS |
Gene: Rpic_3644: Sulfur carrier protein ThiS |
Gene: RS00981: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: RALTA_A0182: Thiazole synthase |
Gene: H16_A0238: Thiazole synthase |
Gene: Reut_A0208: Thiazole synthase |
Gene: Rmet_0165: Thiazole synthase |
Gene: Rpic_3645: Thiazole synthase |
Gene: RSc0109: Thiazole synthase |
Thiazole synthase |
| thiE |
Gene: RALTA_A0183: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: H16_A0239: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Reut_A0209: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Rmet_0166: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Rpic_3646: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: RSc0108: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| h16_A0240 |
Gene: RALTA_A0184: Acetyltransferase, GNAT family |
Gene: H16_A0240: Acetyltransferase, GNAT family |
|
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|
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Acetyltransferase, GNAT family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |