Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Ralstonia

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 6 1
Ralstonia eutropha H16 6 1
Ralstonia eutropha JMP134 5 1
Ralstonia metallidurans CH34 5 1
Ralstonia pickettii 12J 5 1
Ralstonia solanacearum GMI1000 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiC
*
Cupriavidus taiwanensis

Site:
position = -201
score = 66.36
sequence = GGATGAAACAGGGGT...

Gene: RALTA_A0179: Phosphomethylpyrimidine synthase
*
Ralstonia eutropha H16

Site:
position = -201
score = 66.46
sequence = GGATGAAACAGGGGT...

Gene: H16_A0235: Phosphomethylpyrimidine synthase
*
Ralstonia eutropha JMP134

Site:
position = -202
score = 59.55
sequence = GGATGAAACAGGGGT...

Gene: Reut_A0205: Phosphomethylpyrimidine synthase
*
Ralstonia metallidurans CH34

Site:
position = -228
score = 66.14
sequence = GGATGAAACAGGGGT...

Gene: Rmet_0162: Phosphomethylpyrimidine synthase
*
Ralstonia pickettii 12J

Site:
position = -200
score = 61.32
sequence = GGATGAAACAGGGGT...

Gene: Rpic_3642: Phosphomethylpyrimidine synthase
*
Ralstonia solanacearum GMI1000

Site:
position = -196
score = 59.76
sequence = TTGGATGAAACAGGG...

Gene: RSc0113: Phosphomethylpyrimidine synthase
Phosphomethylpyrimidine synthase
thiO
 
Cupriavidus taiwanensis

Gene: RALTA_A0180: Glycine oxidase ThiO (EC 1.4.3.19)
 
Ralstonia eutropha H16

Gene: H16_A0236: Glycine oxidase ThiO (EC 1.4.3.19)
 
Ralstonia eutropha JMP134

Gene: Reut_A0206: Glycine oxidase ThiO (EC 1.4.3.19)
 
Ralstonia metallidurans CH34

Gene: Rmet_0163: Glycine oxidase ThiO (EC 1.4.3.19)
 
Ralstonia pickettii 12J

Gene: Rpic_3643: Glycine oxidase ThiO (EC 1.4.3.19)
 
Ralstonia solanacearum GMI1000

Gene: RS00982: Glycine oxidase ThiO (EC 1.4.3.19)
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
 
Cupriavidus taiwanensis

Gene: RALTA_A0181: Sulfur carrier protein ThiS
 
Ralstonia eutropha H16

Gene: H16_A0237: Sulfur carrier protein ThiS
 
Ralstonia eutropha JMP134

Gene: Reut_A0207: Sulfur carrier protein ThiS
 
Ralstonia metallidurans CH34

Gene: Rmet_0164: Sulfur carrier protein ThiS
 
Ralstonia pickettii 12J

Gene: Rpic_3644: Sulfur carrier protein ThiS
 
Ralstonia solanacearum GMI1000

Gene: RS00981: Sulfur carrier protein ThiS
Sulfur carrier protein ThiS
thiG
 
Cupriavidus taiwanensis

Gene: RALTA_A0182: Thiazole synthase
 
Ralstonia eutropha H16

Gene: H16_A0238: Thiazole synthase
 
Ralstonia eutropha JMP134

Gene: Reut_A0208: Thiazole synthase
 
Ralstonia metallidurans CH34

Gene: Rmet_0165: Thiazole synthase
 
Ralstonia pickettii 12J

Gene: Rpic_3645: Thiazole synthase
 
Ralstonia solanacearum GMI1000

Gene: RSc0109: Thiazole synthase
Thiazole synthase
thiE
 
Cupriavidus taiwanensis

Gene: RALTA_A0183: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Ralstonia eutropha H16

Gene: H16_A0239: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Ralstonia eutropha JMP134

Gene: Reut_A0209: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Ralstonia metallidurans CH34

Gene: Rmet_0166: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Ralstonia pickettii 12J

Gene: Rpic_3646: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Ralstonia solanacearum GMI1000

Gene: RSc0108: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
h16_A0240
 
Cupriavidus taiwanensis

Gene: RALTA_A0184: Acetyltransferase, GNAT family
 
Ralstonia eutropha H16

Gene: H16_A0240: Acetyltransferase, GNAT family
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Acetyltransferase, GNAT family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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