Regulog FMN - Bacillales
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Bacillales
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Anoxybacillus flavithermus WK1 | 4 | 1 |
| Bacillus amyloliquefaciens FZB42 | 5 | 2 |
| Bacillus cereus ATCC 14579 | 5 | 2 |
| Bacillus clausii KSM-K16 | 4 | 2 |
| Bacillus halodurans C-125 | 4 | 1 |
| Bacillus licheniformis DSM 13 | 5 | 2 |
| Bacillus pumilus SAFR-032 | 4 | 2 |
| Bacillus subtilis subsp. subtilis str. 168 | 5 | 2 |
| Geobacillus kaustophilus HTA426 | 5 | 2 |
| Oceanobacillus iheyensis HTE831 | 4 | 2 |
| Paenibacillus sp. JDR-2 | 5 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| ribU |
|
*
Bacillus amyloliquefaciens FZB42 Site: position = -149 score = 125.31 sequence = AGGTTCAGCAGACGT... Gene: RBAM_021200: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bacillus cereus ATCC 14579 Site: position = -322 score = 120.27 sequence = TCTATCTTCGGGGCA... Gene: BC1482: Substrate-specific component RibU of riboflavin ECF transporter |
|
|
*
Bacillus licheniformis DSM 13 Site: position = -157 score = 124.26 sequence = AGGTTCCGCGCGTTT... Gene: BLi02444: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bacillus pumilus SAFR-032 Site: position = -146 score = 123.84 sequence = AGGTTCGTAAACGTT... Gene: BPUM_2038: Substrate-specific component RibU of riboflavin ECF transporter |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -155 score = 122.74 sequence = AGGTTCATAAGCGTT... Gene: BSU23050: Substrate-specific component RibU of riboflavin ECF transporter |
*
Geobacillus kaustophilus HTA426 Site: position = -158 score = 118.11 sequence = AGGTTTGCCGGCGTT... Gene: GK1760: Substrate-specific component RibU of riboflavin ECF transporter |
*
Oceanobacillus iheyensis HTE831 Site: position = -153 score = 113.86 sequence = CGATCATGTTTGTGT... Gene: OB2329: Substrate-specific component RibU of riboflavin ECF transporter |
|
Substrate-specific component RibU of riboflavin ECF transporter |
| CRON 2. | ||||||||||||
| impX |
|
|
|
*
Bacillus clausii KSM-K16 Site: position = -250 score = 102.19 sequence = GGTATCTTCGGGGCA... Gene: ABC3060: Predicted riboflavin transporter, EamA family |
|
|
|
|
|
|
*
Paenibacillus sp. JDR-2 Site: position = -344 score = 106.42 sequence = AGGATCTTCGGGGCA... Gene: Pjdr2_2015: Predicted riboflavin transporter, EamA family |
Predicted riboflavin transporter, EamA family |
| CRON 3. | ||||||||||||
| ribD |
*
Anoxybacillus flavithermus WK1 Site: position = -273 score = 120.9 sequence = GCATCCTTCGGGGCA... Gene: Aflv_1015: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -133 score = 114.48 sequence = AGAGAAGCTATGCAA... Gene: RBAM_021420: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*2
Bacillus cereus ATCC 14579 Site: position = -421 score = 116.52 sequence = GCATCCTTCGGGGTC... Gene: BC4109: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Gene: BC3387: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Gene: ABC3987: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Bacillus halodurans C-125 Site: position = -437 score = 105.24 sequence = TTATCCTTCGGGGCT... Gene: BH1554: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Bacillus licheniformis DSM 13 Site: position = -110 score = 108.03 sequence = AAGAGACTATGTAAA... Gene: BLi02475: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
2
Bacillus pumilus SAFR-032 Gene: BPUM_0703: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Gene: BPUM_3532: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -131 score = 101.45 sequence = ATGAGCCGCTATGCA... Gene: BSU23280: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Geobacillus kaustophilus HTA426 Site: position = -208 score = 113.35 sequence = CCAATATGCGCACGG... Gene: GK2297: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Gene: OB0423: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Paenibacillus sp. JDR-2 Site: position = -452 score = 77.09 sequence = TTACCTTCGGGGCAG... Gene: Pjdr2_2349: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: Aflv_1016: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: RBAM_021410: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: BC4110: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Bacillus clausii KSM-K16 Site: position = -282 score = 108.65 sequence = CTCAACTTCGGGGCA... Gene: ABC1811: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: BH1555: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: BLi02474: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Bacillus pumilus SAFR-032 Site: position = -255 score = 121.02 sequence = AAGAAAGCTATGAAC... Gene: BPUM_2061: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: BSU23270: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: GK2296: Riboflavin synthase alpha chain (EC 2.5.1.9) |
*
Oceanobacillus iheyensis HTE831 Site: position = -280 score = 113.05 sequence = GCTGTATGGATACGT... Gene: OB3215: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Pjdr2_2350: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: Aflv_1017: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: RBAM_021400: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: BC4111: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: ABC1812: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: BH1556: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: BLi02473: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: BSU23260: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: GK2295: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: Pjdr2_2351: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: Aflv_1018: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: RBAM_021390: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BC4112: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: ABC1813: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BH1557: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BLi02472: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BPUM_2059: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: BSU23250: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: GK2294: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: OB3213: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Pjdr2_2352: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| ribB |
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Gene: BPUM_2060: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Gene: OB3214: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |