Regulog FMN - Bacillales

Properties
Regulator type:	RNA regulatory element
Name:	FMN
RFAM:	RF00050
Regulation mode:
Biological process:	Riboflavin biosynthesis
Effector:	Flavin mononucleotide
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Bacillales
By RNA motif - FMN
By effector - Flavin mononucleotide
By pathway - Riboflavin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1	4	1
Bacillus amyloliquefaciens FZB42	5	2
Bacillus cereus ATCC 14579	5	2
Bacillus clausii KSM-K16	4	2
Bacillus halodurans C-125	4	1
Bacillus licheniformis DSM 13	5	2
Bacillus pumilus SAFR-032	4	2
Bacillus subtilis subsp. subtilis str. 168	5	2
Geobacillus kaustophilus HTA426	5	2
Oceanobacillus iheyensis HTE831	4	2
Paenibacillus sp. JDR-2	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ribU	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -149 score = 125.31 sequence = AGGTTCAGCAGACGT... Gene: RBAM_021200: Substrate-specific component RibU of riboflavin ECF transporter	* Bacillus cereus ATCC 14579 Site: position = -322 score = 120.27 sequence = TCTATCTTCGGGGCA... Gene: BC1482: Substrate-specific component RibU of riboflavin ECF transporter	Bacillus clausii KSM-K16	Bacillus halodurans C-125	* Bacillus licheniformis DSM 13 Site: position = -157 score = 124.26 sequence = AGGTTCCGCGCGTTT... Gene: BLi02444: Substrate-specific component RibU of riboflavin ECF transporter	* Bacillus pumilus SAFR-032 Site: position = -146 score = 123.84 sequence = AGGTTCGTAAACGTT... Gene: BPUM_2038: Substrate-specific component RibU of riboflavin ECF transporter	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -155 score = 122.74 sequence = AGGTTCATAAGCGTT... Gene: BSU23050: Substrate-specific component RibU of riboflavin ECF transporter	* Geobacillus kaustophilus HTA426 Site: position = -158 score = 118.11 sequence = AGGTTTGCCGGCGTT... Gene: GK1760: Substrate-specific component RibU of riboflavin ECF transporter	* Oceanobacillus iheyensis HTE831 Site: position = -153 score = 113.86 sequence = CGATCATGTTTGTGT... Gene: OB2329: Substrate-specific component RibU of riboflavin ECF transporter	Paenibacillus sp. JDR-2	Substrate-specific component RibU of riboflavin ECF transporter

CRON 2.
impX	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	* Bacillus clausii KSM-K16 Site: position = -250 score = 102.19 sequence = GGTATCTTCGGGGCA... Gene: ABC3060: Predicted riboflavin transporter, EamA family	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -344 score = 106.42 sequence = AGGATCTTCGGGGCA... Gene: Pjdr2_2015: Predicted riboflavin transporter, EamA family	Predicted riboflavin transporter, EamA family

CRON 3.
ribD	* Anoxybacillus flavithermus WK1 Site: position = -273 score = 120.9 sequence = GCATCCTTCGGGGCA... Gene: Aflv_1015: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Bacillus amyloliquefaciens FZB42 Site: position = -133 score = 114.48 sequence = AGAGAAGCTATGCAA... Gene: RBAM_021420: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	2 Bacillus cereus ATCC 14579* Site: position = -421 score = 116.52 sequence = GCATCCTTCGGGGTC... Gene: BC4109: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Gene: BC3387: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Bacillus clausii KSM-K16 Gene: ABC3987: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Bacillus halodurans C-125 Site: position = -437 score = 105.24 sequence = TTATCCTTCGGGGCT... Gene: BH1554: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Bacillus licheniformis DSM 13 Site: position = -110 score = 108.03 sequence = AAGAGACTATGTAAA... Gene: BLi02475: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	2 Bacillus pumilus SAFR-032 Gene: BPUM_0703: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Gene: BPUM_3532: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -131 score = 101.45 sequence = ATGAGCCGCTATGCA... Gene: BSU23280: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Geobacillus kaustophilus HTA426 Site: position = -208 score = 113.35 sequence = CCAATATGCGCACGG... Gene: GK2297: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Oceanobacillus iheyensis HTE831 Gene: OB0423: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	* Paenibacillus sp. JDR-2 Site: position = -452 score = 77.09 sequence = TTACCTTCGGGGCAG... Gene: Pjdr2_2349: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE	Anoxybacillus flavithermus WK1 Gene: Aflv_1016: Riboflavin synthase alpha chain (EC 2.5.1.9)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_021410: Riboflavin synthase alpha chain (EC 2.5.1.9)	Bacillus cereus ATCC 14579 Gene: BC4110: Riboflavin synthase alpha chain (EC 2.5.1.9)	* Bacillus clausii KSM-K16 Site: position = -282 score = 108.65 sequence = CTCAACTTCGGGGCA... Gene: ABC1811: Riboflavin synthase alpha chain (EC 2.5.1.9)	Bacillus halodurans C-125 Gene: BH1555: Riboflavin synthase alpha chain (EC 2.5.1.9)	Bacillus licheniformis DSM 13 Gene: BLi02474: Riboflavin synthase alpha chain (EC 2.5.1.9)	* Bacillus pumilus SAFR-032 Site: position = -255 score = 121.02 sequence = AAGAAAGCTATGAAC... Gene: BPUM_2061: Riboflavin synthase alpha chain (EC 2.5.1.9)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU23270: Riboflavin synthase alpha chain (EC 2.5.1.9)	Geobacillus kaustophilus HTA426 Gene: GK2296: Riboflavin synthase alpha chain (EC 2.5.1.9)	* Oceanobacillus iheyensis HTE831 Site: position = -280 score = 113.05 sequence = GCTGTATGGATACGT... Gene: OB3215: Riboflavin synthase alpha chain (EC 2.5.1.9)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2350: Riboflavin synthase alpha chain (EC 2.5.1.9)	Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA	Anoxybacillus flavithermus WK1 Gene: Aflv_1017: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_021400: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus cereus ATCC 14579 Gene: BC4111: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus clausii KSM-K16 Gene: ABC1812: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus halodurans C-125 Gene: BH1556: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus licheniformis DSM 13 Gene: BLi02473: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU23260: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Geobacillus kaustophilus HTA426 Gene: GK2295: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_2351: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
ribH	Anoxybacillus flavithermus WK1 Gene: Aflv_1018: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_021390: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus cereus ATCC 14579 Gene: BC4112: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus clausii KSM-K16 Gene: ABC1813: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus halodurans C-125 Gene: BH1557: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus licheniformis DSM 13 Gene: BLi02472: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus pumilus SAFR-032 Gene: BPUM_2059: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU23250: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Geobacillus kaustophilus HTA426 Gene: GK2294: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Oceanobacillus iheyensis HTE831 Gene: OB3213: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2352: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
ribB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032 Gene: BPUM_2060: 3,4-dihydroxy-2-butanone 4-phosphate synthase	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB3214: 3,4-dihydroxy-2-butanone 4-phosphate synthase	Paenibacillus sp. JDR-2	3,4-dihydroxy-2-butanone 4-phosphate synthase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FMN - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --