Regulog FMN - Shewanellaceae
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Shewanella amazonensis SB2B | 1 | 1 |
| Shewanella baltica OS155 | 1 | 1 |
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 1 | 1 |
| Shewanella halifaxensis HAW-EB4 | 1 | 1 |
| Shewanella loihica PV-4 | 1 | 1 |
| Shewanella oneidensis MR-1 | 1 | 1 |
| Shewanella pealeana ATCC 700345 | 1 | 1 |
| Shewanella piezotolerans WP3 | 1 | 1 |
| Shewanella putrefaciens CN-32 | 1 | 1 |
| Shewanella sediminis HAW-EB3 | 1 | 1 |
| Shewanella sp ANA-3 | 1 | 1 |
| Shewanella sp MR-4 | 1 | 1 |
| Shewanella sp MR-7 | 1 | 1 |
| Shewanella sp W3-18-1 | 1 | 1 |
| Shewanella woodyi ATCC 51908 | 1 | 1 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| ribB |
*
Shewanella amazonensis SB2B Site: position = -208 score = 66.64 sequence = ATCCCTGTCAGCCAG... Gene: Sama_0143: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella baltica OS155 Site: position = -420 score = 52.64 sequence = CAAATTCTCAGGGCG... Gene: Sbal_4219: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
|
*
Shewanella frigidimarina NCIMB 400 Site: position = -263 score = 113.09 sequence = ATAATTCTCAGGGCG... Gene: Sfri_3868: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -432 score = 46.29 sequence = ATAATTCTCAGGGCG... Gene: Shal_4187: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella loihica PV-4 Site: position = -368 score = 89.17 sequence = TACATTCTCAGGGCG... Gene: Shew_0040: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella oneidensis MR-1 Site: position = -239 score = 43.22 sequence = TTTGCCACTAGCGAC... Gene: SO_0142: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella pealeana ATCC 700345 Site: position = -306 score = 46.57 sequence = TAACTAGGGTCAGCA... Gene: Spea_0131: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella piezotolerans WP3 Site: position = -242 score = 45.88 sequence = TGCTGCGCACTATGT... Gene: swp_0169: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella putrefaciens CN-32 Site: position = -229 score = 49.47 sequence = TGGCAACAGTGCTGA... Gene: Sputcn32_0134: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella sediminis HAW-EB3 Site: position = -455 score = 44.4 sequence = TAAATTCTCAGGGCG... Gene: Ssed_4372: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella sp ANA-3 Site: position = -303 score = 42.23 sequence = ATGCCTATCGAGCGC... Gene: Shewana3_0134: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella sp MR-4 Site: position = -323 score = 39.2 sequence = GCTTGTCTCGTTATG... Gene: Shewmr4_0135: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella sp MR-7 Site: position = -259 score = 41.92 sequence = TTTGCCAGCATAGCA... Gene: Shewmr7_0129: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella sp W3-18-1 Site: position = -397 score = 24.76 sequence = GAAACTCCCCACCGG... Gene: Sputw3181_3938: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
*
Shewanella woodyi ATCC 51908 Site: position = -401 score = 52.69 sequence = TAAATTCTCAGGGCG... Gene: Swoo_4764: 3,4-dihydroxy-2-butanone 4-phosphate synthase |
3,4-dihydroxy-2-butanone 4-phosphate synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |