Regulog PerR - Cyanobacteria
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Peroxide stress response |
| Effector: | Manganese ion, (Mn2+) |
| Phylum: | Cyanobacteria |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - FUR
- By effector - Manganese ion, (Mn2+)
- By pathway - Peroxide stress response
| Genome | Genes | Operons |
|---|---|---|
| Trichodesmium erythraeum IMS101 | ||
| Cyanothece sp. ATCC 51142 | 3 | 3 |
| Cyanothece sp. PCC 8801 | ||
| Nostoc sp. PCC 7120 | ||
| Microcystis aeruginosa NIES-843 | ||
| Synechocystis sp. PCC 6803 | 2 | 2 |
| Synechococcus sp. PCC 7002 | 3 | 2 |
| Cyanothece sp. PCC 7425 | 3 | 3 |
| Prochlorococcus marinus str. MIT 9313 | ||
| Thermosynechococcus elongatus BP-1 | ||
| Synechococcus elongatus PCC 7942 | 4 | 3 |
| Synechococcus sp. WH 8102 | ||
| Synechococcus sp. JA-3-3Ab | ||
| Gloeobacter violaceus PCC 7421 | 2 | 2 |
| Genes | Function | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||
| rub |
|
|
Gene: PCC8801_1511: Predicted rubrerythrin |
Gene: alr1174: Predicted rubrerythrin |
|
|
|
|
Gene: PMT2166: Predicted rubrerythrin |
|
*
Synechococcus elongatus PCC 7942 Site: position = -45 score = 5.151 sequence = TAAGACTTATTCTTA Gene: Synpcc7942_1649: Predicted rubrerythrin |
Gene: SYNW2369: Predicted rubrerythrin |
|
*
Gloeobacter violaceus PCC 7421 Site: position = -62 score = 4.41876 sequence = ATAGAACGATTCTTA Site: position = -45 score = 4.63516 sequence = TAAGACTTGTTCTAG Gene: glr3734: Predicted rubrerythrin |
Predicted rubrerythrin |
| CRON 2. | |||||||||||||||
| isiA |
Gene: Tery_1667: Iron stress-induced chlorophyll-binding protein |
Gene: cce_1785: Iron stress-induced chlorophyll-binding protein |
|
Gene: all4001: Iron stress-induced chlorophyll-binding protein |
|
Gene: sll0247: Iron stress-induced chlorophyll-binding protein |
*
Synechococcus sp. PCC 7002 Site: position = -273 score = 4.89173 sequence = TGAGAATAATTGTAG Gene: SYNPCC7002_A1292: Iron stress-induced chlorophyll-binding protein |
*
Cyanothece sp. PCC 7425 Site: position = -95 score = 4.85737 sequence = TGAGAAAGATTCTGA Gene: Cyan7425_2434: Iron stress-induced chlorophyll-binding protein |
|
Gene: null: Iron stress-induced chlorophyll-binding protein |
*
Synechococcus elongatus PCC 7942 Site: position = -43 score = 5.22286 sequence = TGAGAATTATTGTAA Gene: Synpcc7942_1542: Iron stress-induced chlorophyll-binding protein |
|
|
|
Iron stress-induced chlorophyll-binding protein |
| isiB |
Gene: Tery_1666: Flavodoxin |
*
Cyanothece sp. ATCC 51142 Site: position = -64 score = 5.70454 sequence = TGAGAATTATTCTAA Gene: cce_3031: Flavodoxin |
|
Gene: alr2405: Flavodoxin |
|
Gene: sll0248: Flavodoxin |
Gene: SYNPCC7002_A1291: Flavodoxin |
|
|
|
Gene: Synpcc7942_1541: Flavodoxin |
|
Gene: CYA_2605: Flavodoxin |
2
Gloeobacter violaceus PCC 7421 Gene: gvip027: Flavodoxin Gene: gvip026: Flavodoxin |
Flavodoxin |
| CRON 3. | |||||||||||||||
| perR |
|
*
Cyanothece sp. ATCC 51142 Site: position = -134 score = 5.55179 sequence = TCAGAATAATTCTTA Gene: cce_3127: Peroxide stress response transcriptional regulator, Fur family |
|
|
|
*
Synechocystis sp. PCC 6803 Site: position = -233 score = 5.29997 sequence = TCAGAATAGTTCTGA Site: position = -181 score = 4.76793 sequence = TTATAATTATTCTAT Gene: slr1738: Peroxide stress response transcriptional regulator, Fur family |
Gene: SYNPCC7002_A1836: Peroxide stress response transcriptional regulator, Fur family |
*
Cyanothece sp. PCC 7425 Site: position = -138 score = 5.20207 sequence = CCAGAATAATTCTGA Site: position = -86 score = 5.21115 sequence = TGAGAATTATACTAA Gene: Cyan7425_1597: Peroxide stress response transcriptional regulator, Fur family |
|
|
*
Synechococcus elongatus PCC 7942 Site: position = -119 score = 5.05841 sequence = TAAGAATAAGTCTTA Gene: Synpcc7942_1648: Peroxide stress response transcriptional regulator, Fur family |
|
|
*
Gloeobacter violaceus PCC 7421 Site: position = -56 score = 4.85764 sequence = TTAGATCTATTCTAA Gene: glr3733: Peroxide stress response transcriptional regulator, Fur family |
Peroxide stress response transcriptional regulator, Fur family |
| CRON 4. | |||||||||||||||
| ahpC |
Gene: Tery_0162: Peroxiredoxin |
*
Cyanothece sp. ATCC 51142 Site: position = -63 score = 5.75852 sequence = TAAGAATTATTCTGA Gene: cce_3126: Peroxiredoxin |
Gene: PCC8801_0474: Peroxiredoxin |
Gene: all1541: Peroxiredoxin |
Gene: MAE_62780: Peroxiredoxin |
*
Synechocystis sp. PCC 6803 Site: position = -144 score = 4.72516 sequence = ATAGAATAATTATAA Site: position = -92 score = 5.3933 sequence = TCAGAACTATTCTGA Gene: sll1621: Peroxiredoxin |
*
Synechococcus sp. PCC 7002 Site: position = -79 score = 5.50828 sequence = TAAGAATTATTCTGG Gene: SYNPCC7002_A0793: Peroxiredoxin |
*
Cyanothece sp. PCC 7425 Site: position = -138 score = 4.81945 sequence = TTAGTATAATTCTCA Site: position = -86 score = 5.50828 sequence = TCAGAATTATTCTGG Gene: Cyan7425_1596: Peroxiredoxin |
Gene: PMT1186: Peroxiredoxin |
|
|
|
|
|
Peroxiredoxin |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |