Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YczG - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: ArsR
Regulation mode: repressor
Biological process: Utilization of aromatic compounds
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 2
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13 3 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 2 2
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ycnE
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -50
score = 6.23808
sequence = GTTCGATGAAATTCGAAC

Gene: BSU03870: Putative monooxygenase
*
Bacillus amyloliquefaciens FZB42

Site:
position = -51
score = 6.48895
sequence = GTTCGATAATATTCGAAC

Gene: RBAM_004120: Putative monooxygenase
 
Bacillus pumilus SAFR-032

Gene: BPUM_3581: Putative monooxygenase
*
Bacillus licheniformis DSM 13

Site:
position = -86
score = 6.57733
sequence = GTTCGAAGATTTTCGAAC

Gene: BLi00471: Putative monooxygenase
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3023: Putative monooxygenase
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative monooxygenase
nfrA2
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU03860: NAD(P)H-dependent nitro/flavin reductase
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_004110: NAD(P)H-dependent nitro/flavin reductase
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi00470: NAD(P)H-dependent nitro/flavin reductase
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2953: NAD(P)H-dependent nitro/flavin reductase
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NAD(P)H-dependent nitro/flavin reductase
 
CRON 2.
BC1999
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -42
score = 6.64368
sequence = GTTCGAATATATTCGAAC

Gene: BC1999: Uncharacterized oxidoreductase
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Uncharacterized oxidoreductase
 
CRON 3.
yczG
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -107
score = 6.23808
sequence = GTTCGAATTTCATCGAAC

Gene: BSU03880: Transcriptional regulator, ArsR family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -108
score = 6.48895
sequence = GTTCGAATATTATCGAAC

Gene: RBAM_004130: Transcriptional regulator, ArsR family
 
Bacillus pumilus SAFR-032

Gene: BPUM_0360: Transcriptional regulator, ArsR family
*
Bacillus licheniformis DSM 13

Site:
position = -109
score = 6.57733
sequence = GTTCGAAAATCTTCGAAC

Gene: BLi00472: Transcriptional regulator, ArsR family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -82
score = 6.64368
sequence = GTTCGAATATATTCGAAC

Gene: BC1998: Transcriptional regulator, ArsR family
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator, ArsR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD