Regulog CsoR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	CsoR
Regulation mode:	repressor
Biological process:	Copper resistance
Effector:	Copper ion, (Cu+)
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 25 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By trascription factor - CsoR
By TF family - CsoR
By effector - Copper ion, (Cu+)
By pathway - Copper resistance

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	3	3
Bacillus amyloliquefaciens FZB42	2	2
Bacillus pumilus SAFR-032	2	2
Bacillus licheniformis DSM 13	2	2
Anoxybacillus flavithermus WK1	3	1
Geobacillus kaustophilus HTA426	3	1
Bacillus cereus ATCC 14579	2	2
Bacillus halodurans C-125	2	2
Bacillus clausii KSM-K16	3	3
Oceanobacillus iheyensis HTE831	4	2
Paenibacillus sp. JDR-2	7	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
csoR	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33520: Transcriptional repressor of copper utilisation, RcnR family	Bacillus amyloliquefaciens FZB42 Gene: RBAM_030700: Transcriptional repressor of copper utilisation, RcnR family	Bacillus pumilus SAFR-032 Gene: BPUM_3023: Transcriptional repressor of copper utilisation, RcnR family	Bacillus licheniformis DSM 13 Gene: BLi03555: Transcriptional repressor of copper utilisation, RcnR family	* Anoxybacillus flavithermus WK1 Site: position = -42 score = 4.32281 sequence = ATACCCATTACCGGTAT Gene: Aflv_1217: Transcriptional repressor of copper utilisation, RcnR family	* Geobacillus kaustophilus HTA426 Site: position = -43 score = 4.32281 sequence = ATACCCATTACCGGTAT Gene: GK0901: Transcriptional repressor of copper utilisation, RcnR family	Bacillus cereus ATCC 14579 Gene: BC3732: Transcriptional repressor of copper utilisation, RcnR family	Bacillus halodurans C-125 Gene: BH0558: Transcriptional repressor of copper utilisation, RcnR family	Bacillus clausii KSM-K16 Gene: ABC2444: Transcriptional repressor of copper utilisation, RcnR family	* Oceanobacillus iheyensis HTE831 Site: position = -194 score = 4.60647 sequence = ATACCCCAACGAAGTAT Site: position = -49 score = 5.2131 sequence = ATACATTAGGGGGGTAT Gene: OB1141: Transcriptional repressor of copper utilisation, RcnR family	* Paenibacillus sp. JDR-2 Site: position = -59 score = 5.86074 sequence = ATACCCCTAGGGGGTAT Site: position = -23 score = 5.55422 sequence = ATACCCCCTGGAGGTAT Gene: Pjdr2_5324: Transcriptional repressor of copper utilisation, RcnR family	Transcriptional repressor of copper utilisation, RcnR family
copA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -34 score = 5.51705 sequence = ATACCCCCCAGGTGTAT Gene: BSU33500: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus amyloliquefaciens FZB42 Site: position = -27 score = 5.39408 sequence = ATACCCCCTGGGGGTTT Gene: RBAM_030680: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus pumilus SAFR-032 Site: position = -34 score = 5.57323 sequence = ATACCCCCATGGTGTAT Gene: BPUM_3021: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus licheniformis DSM 13 Site: position = -33 score = 5.17188 sequence = ATACCTACAAGGGGTAT Gene: BLi03553: Copper-translocating P-type ATPase (EC 3.6.3.4)	Anoxybacillus flavithermus WK1 Gene: Aflv_1218: Copper-translocating P-type ATPase (EC 3.6.3.4)	Geobacillus kaustophilus HTA426 Gene: GK0902: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus cereus ATCC 14579 Site: position = -32 score = 5.55679 sequence = ATACCTCATAAGGGTAT Gene: BC3730: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus halodurans C-125 Site: position = -31 score = 5.25769 sequence = ATACCTAATAGGGGTAT Gene: BH0557: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Bacillus clausii KSM-K16 Site: position = -64 score = 5.86331 sequence = ATACCCCTATAGGGTAT Gene: ABC3231: Copper-translocating P-type ATPase (EC 3.6.3.4)	Oceanobacillus iheyensis HTE831 Gene: OB1142: Copper-translocating P-type ATPase (EC 3.6.3.4)	* Paenibacillus sp. JDR-2 Site: position = -85 score = 5.17188 sequence = ATACCCCCAGTAGGTAT Gene: Pjdr2_2774: Copper-translocating P-type ATPase (EC 3.6.3.4)	Copper-translocating P-type ATPase (EC 3.6.3.4)
copZ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -57 score = 5.89293 sequence = ATACCCTACGGGGGTAT Gene: BSU33510: Copper insertion chaperone and transporter component	* Bacillus amyloliquefaciens FZB42 Site: position = -44 score = 5.89293 sequence = ATACCCTACAGGGGTAT Gene: RBAM_030690: Copper insertion chaperone and transporter component	* Bacillus pumilus SAFR-032 Site: position = -55 score = 5.8955 sequence = ATACCCTACTAGGGTAT Gene: BPUM_3022: Copper insertion chaperone and transporter component	* Bacillus licheniformis DSM 13 Site: position = -65 score = 5.89293 sequence = ATACCCTACAGGGGTAT Gene: BLi03554: Copper insertion chaperone and transporter component	Anoxybacillus flavithermus WK1 Gene: Aflv_1219: Copper insertion chaperone and transporter component	Geobacillus kaustophilus HTA426 Gene: GK0903: Copper insertion chaperone and transporter component	* Bacillus cereus ATCC 14579 Site: position = -71 score = 5.11976 sequence = TTACCTTAGGGGGGTAT Gene: BC3731: Copper insertion chaperone and transporter component	* Bacillus halodurans C-125 Site: position = -54 score = 4.90852 sequence = ATACAATAGGGGGGTAT Gene: BH0556: Copper insertion chaperone and transporter component	* Bacillus clausii KSM-K16 Site: position = -57 score = 5.12515 sequence = ATACCTGACGGGGGTAT Gene: ABC2443: Copper insertion chaperone and transporter component	Oceanobacillus iheyensis HTE831 Gene: OB1143: Copper insertion chaperone and transporter component	Paenibacillus sp. JDR-2 Gene: Pjdr2_5323: Copper insertion chaperone and transporter component	Copper insertion chaperone and transporter component

CRON 2.
Pjdr2_3010	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1690: Two component transcriptional regulator, winged helix family	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -69 score = 5.50803 sequence = ATACCCATGGGGGGTAT Gene: Pjdr2_3010: Two component transcriptional regulator, winged helix family	Two component transcriptional regulator, winged helix family
Pjdr2_3011	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1689: Two-component sensor histidine kinase	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3011: Two-component sensor histidine kinase	Two-component sensor histidine kinase
ydhK	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -43 score = 5.19603 sequence = ATACCGTTCGGGGGTAT Gene: BSU05790: Hypothetical protein	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1692: Hypothetical protein	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	* Bacillus clausii KSM-K16 Site: position = -51 score = 5.97874 sequence = ATACCCCACTAGGGTAT Gene: ABC3339: Hypothetical protein	* Oceanobacillus iheyensis HTE831 Site: position = -128 score = 5.2131 sequence = ATACCCCCCTAATGTAT Gene: OB1140: Hypothetical protein	Paenibacillus sp. JDR-2 Gene: Pjdr2_3012: Hypothetical protein	Hypothetical protein
yoxB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU18520: Hypothetical protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_018730: Hypothetical protein	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3013: Hypothetical protein	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CsoR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --