Regulog ComA - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator |
| Biological process: | Competence |
| Effector: | ComP, sensor histidine kinase (ComX) |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LuxR
- By effector - ComP, sensor histidine kinase (ComX)
- By pathway - Competence
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 13 | 7 |
| Bacillus amyloliquefaciens FZB42 | 8 | 4 |
| Bacillus pumilus SAFR-032 | 7 | 2 |
| Bacillus licheniformis DSM 13 | 5 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| degQ |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -145 score = 8.09313 sequence = TTGCGGTGTCACGCAG-(16)-TTTCGG Gene: BSU31720: Degradation enzyme regulation protein DegQ |
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Bacillus amyloliquefaciens FZB42 Site: position = -146 score = 8.09313 sequence = TTGCGGTGTCACGCAG-(17)-TTTCGG Gene: RBAM_028800: Degradation enzyme regulation protein DegQ |
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Bacillus pumilus SAFR-032 Site: position = -145 score = 8.41765 sequence = TTGCGGTATCACGCAC-(16)-TTTCGG Gene: BPUM_2841: Degradation enzyme regulation protein DegQ |
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Bacillus licheniformis DSM 13 Site: position = -143 score = 8.40522 sequence = TTGCGGTGTAACGCAT-(16)-TTTCGG Gene: BLi03360: Degradation enzyme regulation protein DegQ |
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Degradation enzyme regulation protein DegQ |
| CRON 2. | ||||||||||||
| rapC |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -104 score = 7.2488 sequence = TTGCGTGCTCCCGAAA-(16)-TTTCGG Gene: BSU03770: Response regulator aspartate phosphatase |
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Bacillus amyloliquefaciens FZB42 Site: position = -103 score = 7.1194 sequence = TTGCGCTCTGCCGAAA-(15)-TTTCGG Gene: RBAM_004010: Response regulator aspartate phosphatase |
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Response regulator aspartate phosphatase |
| phrC |
Gene: BSU03780: Secreted regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) |
Gene: RBAM_004020: Secreted regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) |
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Secreted regulator of the activity of phosphatase RapC and competence and sporulation stimulating factor (CSF) |
| CRON 3. | ||||||||||||
| rapA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -106 score = 8.06221 sequence = TTGCGGTTAGCCGAAA-(8)-TTGCGG Gene: BSU12430: Response regulator aspartate phosphatase |
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Bacillus amyloliquefaciens FZB42 Site: position = -112 score = 7.29514 sequence = TTGCGGATATCCGAAA-(8)-TTGCGG Gene: RBAM_012450: Response regulator aspartate phosphatase |
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Response regulator aspartate phosphatase |
| phrA |
Gene: BSU12440: Secreted inhibitor of the activity of phosphatase RapA |
Gene: RBAM_012460: Secreted inhibitor of the activity of phosphatase RapA |
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Secreted inhibitor of the activity of phosphatase RapA |
| CRON 4. | ||||||||||||
| rapF |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -106 score = 8.37795 sequence = ATGCGGTGTAACGAAA-(7)-TTGCGG Gene: BSU37460: Response regulator aspartate phosphatase |
Gene: RBAM_034530: Response regulator aspartate phosphatase |
Gene: BPUM_2152: Response regulator aspartate phosphatase |
Gene: BLi01063: Response regulator aspartate phosphatase |
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Response regulator aspartate phosphatase |
| phrF |
Gene: BSU37470: Secreted regulator of the activity of phosphatase RapF |
Gene: RBAM_034540: Secreted regulator of the activity of phosphatase RapF |
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Secreted regulator of the activity of phosphatase RapF |
| CRON 5. | ||||||||||||
| pel |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -124 score = 7.95263 sequence = TTGCAGAATGCCGCAA-(16)-TTTCGG Gene: BSU07560: Pectate lyase precursor (EC 4.2.2.2) |
Gene: RBAM_007720: Pectate lyase precursor (EC 4.2.2.2) |
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Gene: BLi01404: Pectate lyase precursor (EC 4.2.2.2) |
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Pectate lyase precursor (EC 4.2.2.2) |
| CRON 6. | ||||||||||||
| rapE |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -108 score = 7.90335 sequence = TTGCGGTCTCACCGAA-(8)-TTGCGG Gene: BSU25830: Response regulator aspartate phosphatase |
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Gene: BLi02480: Response regulator aspartate phosphatase |
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Response regulator aspartate phosphatase |
| phrE |
Gene: BSU25840: Regulator of the activity of phosphatase RapE |
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Regulator of the activity of phosphatase RapE |
| CRON 7. | ||||||||||||
| srfAC |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -364 score = 9.51002 sequence = TTTCGGCATCCCGCAT-(17)-TTTCGG Gene: BSU03480: Surfactin synthetase subunit 1 |
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Bacillus amyloliquefaciens FZB42 Site: position = -337 score = 8.98174 sequence = TTTCGGTGTGCCGCAT-(17)-TTTCGG Gene: RBAM_003650: Surfactin synthetase subunit 1 |
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Bacillus pumilus SAFR-032 Site: position = -330 score = 8.8041 sequence = ATTCGGCATAACGCAT-(17)-TTTCGG Gene: BPUM_0319: Surfactin synthetase subunit 1 |
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Bacillus licheniformis DSM 13 Site: position = -372 score = 9.26255 sequence = ATTCGGTATCCCGCAT-(17)-TTTCGG Site: position = -405 score = 8.20459 sequence = TTTCGGGATCGCGCAT-(17)-ATTCGG Gene: BLi00401: Surfactin synthetase subunit 1 |
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Surfactin synthetase subunit 1 |
| srfAB |
Gene: BSU03490: Surfactin synthetase subunit 2 |
Gene: RBAM_003660: Surfactin synthetase subunit 2 |
Gene: BPUM_0320: Surfactin synthetase subunit 2 |
Gene: BLi00402: Surfactin synthetase subunit 2 |
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Surfactin synthetase subunit 2 |
| srfAC |
Gene: BSU03510: Surfactin synthetase subunit 3 |
Gene: RBAM_003680: Surfactin synthetase subunit 3 |
Gene: BPUM_0321: Surfactin synthetase subunit 3 |
Gene: BLi00403: Surfactin synthetase subunit 3 |
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Surfactin synthetase subunit 3 |
| BPUM_0322 |
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Gene: BPUM_0322: Nonribosomal peptide synthetase subunit |
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Nonribosomal peptide synthetase subunit |
| BPUM_0323 |
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Gene: BPUM_0323: Nonribosomal peptide synthetase subunit |
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Nonribosomal peptide synthetase subunit |
| srfAD |
Gene: BSU03520: Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
Gene: RBAM_003690: Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
Gene: BPUM_0324: Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
Gene: BLi00404: Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
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Surfactin synthetase thioesterase subunit (EC 3.1.2.-) |
| comS |
Gene: BSU03500: Competence protein S |
Gene: RBAM_003670: Competence protein S |
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Competence protein S |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |