Regulog CcpC - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Citrate metabolism |
| Effector: | Citrate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LysR
- By effector - Citrate
- By pathway - Citrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 5 | 3 |
| Bacillus amyloliquefaciens FZB42 | 4 | 2 |
| Bacillus pumilus SAFR-032 | 2 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | 1 | 1 |
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | 2 | 2 |
| Paenibacillus sp. JDR-2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| citZ |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -172 score = 5.08261 sequence = ATAAAAATTTGTTAT Gene: BSU29140: Citrate synthase (EC 2.3.3.1) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -172 score = 5.45906 sequence = ATAAGAATTTGTTAT Gene: RBAM_026180: Citrate synthase (EC 2.3.3.1) |
Gene: BPUM_2556: Citrate synthase (EC 2.3.3.1) |
Gene: BLi03062: Citrate synthase (EC 2.3.3.1) |
Gene: Aflv_0504: Citrate synthase (EC 2.3.3.1) |
Gene: GK2736: Citrate synthase (EC 2.3.3.1) |
Gene: BC4594: Citrate synthase (EC 2.3.3.1) |
Gene: BH3160: Citrate synthase (EC 2.3.3.1) |
Gene: ABC2715: Citrate synthase (EC 2.3.3.1) |
Gene: OB2168: Citrate synthase (EC 2.3.3.1) |
Gene: Pjdr2_4473: Citrate synthase (EC 2.3.3.1) |
Citrate synthase (EC 2.3.3.1) |
| icd |
Gene: BSU29130: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: RBAM_026170: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BPUM_2555: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BLi03061: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: Aflv_0505: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: GK2735: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BC4593: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: BH3159: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: ABC2714: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: OB2167: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Gene: Pjdr2_4472: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) |
| mdh |
Gene: BSU29120: Malate dehydrogenase (EC 1.1.1.37) |
Gene: RBAM_026160: Malate dehydrogenase (EC 1.1.1.37) |
Gene: BPUM_2554: Malate dehydrogenase (EC 1.1.1.37) |
Gene: BLi03060: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Aflv_0506: Malate dehydrogenase (EC 1.1.1.37) |
Gene: GK2734: Malate dehydrogenase (EC 1.1.1.37) |
Gene: BC4592: Malate dehydrogenase (EC 1.1.1.37) |
Gene: BH3158: Malate dehydrogenase (EC 1.1.1.37) |
Gene: ABC2713: Malate dehydrogenase (EC 1.1.1.37) |
Gene: OB2166: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Pjdr2_4471: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| CRON 2. | ||||||||||||
| citB |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -141 score = 5.10347 sequence = ATAAGTCGAACTTAT Gene: BSU18000: Aconitate hydratase ( EC 4.2.1.3 ) |
*
Bacillus amyloliquefaciens FZB42 Site: position = -146 score = 5.26565 sequence = ATAAGACGATCTTAT Gene: RBAM_017800: Aconitate hydratase ( EC 4.2.1.3 ) |
*
Bacillus pumilus SAFR-032 Site: position = -152 score = 5.6586 sequence = ATAAGATAAACTTAT Gene: BPUM_1699: Aconitate hydratase ( EC 4.2.1.3 ) |
*
Bacillus licheniformis DSM 13 Site: position = -147 score = 5.46949 sequence = ATAAGTCATTCTTAT Gene: BLi02047: Aconitate hydratase ( EC 4.2.1.3 ) |
Gene: Aflv_1492: Aconitate hydratase ( EC 4.2.1.3 ) |
Gene: GK1347: Aconitate hydratase ( EC 4.2.1.3 ) |
*
Bacillus cereus ATCC 14579 Site: position = -145 score = 4.88108 sequence = ATAAAGAAAACTTAT Gene: BC3616: Aconitate hydratase ( EC 4.2.1.3 ) |
Gene: BH2299: Aconitate hydratase ( EC 4.2.1.3 ) |
Gene: ABC2157: Aconitate hydratase ( EC 4.2.1.3 ) |
*
Oceanobacillus iheyensis HTE831 Site: position = -198 score = 5.44163 sequence = ATAAGATTTTGTTAT Gene: OB1681: Aconitate hydratase ( EC 4.2.1.3 ) |
2
Paenibacillus sp. JDR-2 Gene: Pjdr2_0811: Aconitate hydratase ( EC 4.2.1.3 ) Gene: Pjdr2_2034: Aconitate hydratase ( EC 4.2.1.3 ) |
Aconitate hydratase ( EC 4.2.1.3 ) |
| CRON 3. | ||||||||||||
| ccpC |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -37 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BSU14140: Transcriptional repressor of citB and citZ, LacI family |
Gene: RBAM_013910: Transcriptional repressor of citB and citZ, LacI family |
*
Bacillus pumilus SAFR-032 Site: position = -34 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BPUM_1310: Transcriptional repressor of citB and citZ, LacI family |
*
Bacillus licheniformis DSM 13 Site: position = -32 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BLi01628: Transcriptional repressor of citB and citZ, LacI family |
|
|
Gene: BC3982: Transcriptional repressor of citB and citZ, LacI family |
|
|
*
Oceanobacillus iheyensis HTE831 Site: position = -28 score = 5.21054 sequence = ATAATATATACTTAT Gene: OB1497: Transcriptional repressor of citB and citZ, LacI family |
|
Transcriptional repressor of citB and citZ, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |