Regulog CcpC - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Citrate metabolism
Effector:	Citrate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 12 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - LysR
By effector - Citrate
By pathway - Citrate metabolism

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	5	3
Bacillus amyloliquefaciens FZB42	4	2
Bacillus pumilus SAFR-032	2	2
Bacillus licheniformis DSM 13	2	2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579	1	1
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831	2	2
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
citZ	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -172 score = 5.08261 sequence = ATAAAAATTTGTTAT Gene: BSU29140: Citrate synthase (EC 2.3.3.1)	* Bacillus amyloliquefaciens FZB42 Site: position = -172 score = 5.45906 sequence = ATAAGAATTTGTTAT Gene: RBAM_026180: Citrate synthase (EC 2.3.3.1)	Bacillus pumilus SAFR-032 Gene: BPUM_2556: Citrate synthase (EC 2.3.3.1)	Bacillus licheniformis DSM 13 Gene: BLi03062: Citrate synthase (EC 2.3.3.1)	Anoxybacillus flavithermus WK1 Gene: Aflv_0504: Citrate synthase (EC 2.3.3.1)	Geobacillus kaustophilus HTA426 Gene: GK2736: Citrate synthase (EC 2.3.3.1)	Bacillus cereus ATCC 14579 Gene: BC4594: Citrate synthase (EC 2.3.3.1)	Bacillus halodurans C-125 Gene: BH3160: Citrate synthase (EC 2.3.3.1)	Bacillus clausii KSM-K16 Gene: ABC2715: Citrate synthase (EC 2.3.3.1)	Oceanobacillus iheyensis HTE831 Gene: OB2168: Citrate synthase (EC 2.3.3.1)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4473: Citrate synthase (EC 2.3.3.1)	Citrate synthase (EC 2.3.3.1)
icd	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU29130: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_026170: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus pumilus SAFR-032 Gene: BPUM_2555: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus licheniformis DSM 13 Gene: BLi03061: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Anoxybacillus flavithermus WK1 Gene: Aflv_0505: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Geobacillus kaustophilus HTA426 Gene: GK2735: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus cereus ATCC 14579 Gene: BC4593: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus halodurans C-125 Gene: BH3159: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Bacillus clausii KSM-K16 Gene: ABC2714: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Oceanobacillus iheyensis HTE831 Gene: OB2167: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4472: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)	Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
mdh	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU29120: Malate dehydrogenase (EC 1.1.1.37)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_026160: Malate dehydrogenase (EC 1.1.1.37)	Bacillus pumilus SAFR-032 Gene: BPUM_2554: Malate dehydrogenase (EC 1.1.1.37)	Bacillus licheniformis DSM 13 Gene: BLi03060: Malate dehydrogenase (EC 1.1.1.37)	Anoxybacillus flavithermus WK1 Gene: Aflv_0506: Malate dehydrogenase (EC 1.1.1.37)	Geobacillus kaustophilus HTA426 Gene: GK2734: Malate dehydrogenase (EC 1.1.1.37)	Bacillus cereus ATCC 14579 Gene: BC4592: Malate dehydrogenase (EC 1.1.1.37)	Bacillus halodurans C-125 Gene: BH3158: Malate dehydrogenase (EC 1.1.1.37)	Bacillus clausii KSM-K16 Gene: ABC2713: Malate dehydrogenase (EC 1.1.1.37)	Oceanobacillus iheyensis HTE831 Gene: OB2166: Malate dehydrogenase (EC 1.1.1.37)	Paenibacillus sp. JDR-2 Gene: Pjdr2_4471: Malate dehydrogenase (EC 1.1.1.37)	Malate dehydrogenase (EC 1.1.1.37)

CRON 2.
citB	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -141 score = 5.10347 sequence = ATAAGTCGAACTTAT Gene: BSU18000: Aconitate hydratase ( EC 4.2.1.3 )	* Bacillus amyloliquefaciens FZB42 Site: position = -146 score = 5.26565 sequence = ATAAGACGATCTTAT Gene: RBAM_017800: Aconitate hydratase ( EC 4.2.1.3 )	* Bacillus pumilus SAFR-032 Site: position = -152 score = 5.6586 sequence = ATAAGATAAACTTAT Gene: BPUM_1699: Aconitate hydratase ( EC 4.2.1.3 )	* Bacillus licheniformis DSM 13 Site: position = -147 score = 5.46949 sequence = ATAAGTCATTCTTAT Gene: BLi02047: Aconitate hydratase ( EC 4.2.1.3 )	Anoxybacillus flavithermus WK1 Gene: Aflv_1492: Aconitate hydratase ( EC 4.2.1.3 )	Geobacillus kaustophilus HTA426 Gene: GK1347: Aconitate hydratase ( EC 4.2.1.3 )	* Bacillus cereus ATCC 14579 Site: position = -145 score = 4.88108 sequence = ATAAAGAAAACTTAT Gene: BC3616: Aconitate hydratase ( EC 4.2.1.3 )	Bacillus halodurans C-125 Gene: BH2299: Aconitate hydratase ( EC 4.2.1.3 )	Bacillus clausii KSM-K16 Gene: ABC2157: Aconitate hydratase ( EC 4.2.1.3 )	* Oceanobacillus iheyensis HTE831 Site: position = -198 score = 5.44163 sequence = ATAAGATTTTGTTAT Gene: OB1681: Aconitate hydratase ( EC 4.2.1.3 )	2 Paenibacillus sp. JDR-2 Gene: Pjdr2_0811: Aconitate hydratase ( EC 4.2.1.3 ) Gene: Pjdr2_2034: Aconitate hydratase ( EC 4.2.1.3 )	Aconitate hydratase ( EC 4.2.1.3 )

CRON 3.
ccpC	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -37 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BSU14140: Transcriptional repressor of citB and citZ, LacI family	Bacillus amyloliquefaciens FZB42 Gene: RBAM_013910: Transcriptional repressor of citB and citZ, LacI family	* Bacillus pumilus SAFR-032 Site: position = -34 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BPUM_1310: Transcriptional repressor of citB and citZ, LacI family	* Bacillus licheniformis DSM 13 Site: position = -32 score = 5.67603 sequence = ATAAGAAAAACTTAT Gene: BLi01628: Transcriptional repressor of citB and citZ, LacI family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579 Gene: BC3982: Transcriptional repressor of citB and citZ, LacI family	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -28 score = 5.21054 sequence = ATAATATATACTTAT Gene: OB1497: Transcriptional repressor of citB and citZ, LacI family	Paenibacillus sp. JDR-2	Transcriptional repressor of citB and citZ, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CcpC - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --