Regulog DgoR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Galactonate utilization
Effector:	Galactonate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By TF family - GntR/Others
By effector - Galactonate
By pathway - Galactonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	5	1
Salmonella typhimurium LT2	4	1
Citrobacter koseri ATCC BAA-895
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	5	1
Enterobacter sp. 638	5	1
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568	6	2
Erwinia carotovora subsp. atroseptica SCRI1043	5	1
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
Spro_0710	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -118 score = 3.63876 sequence = TTGTATTACCT Site: position = -140 score = 4.75763 sequence = TTGTATTACAA Gene: Spro_0710: Galactose-proton symport	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Galactose-proton symport

CRON 2.
dgoR	* Escherichia coli str. K-12 substr. MG1655 Site: position = -76 score = 4.03213 sequence = TGGTACTACAA Site: position = -119 score = 4.05878 sequence = TTGTACTACAT Site: position = -140 score = 5.48313 sequence = TTGTAGTACAA Gene: b4479: D-Galactonate repressor DgoR, GntR family	* Salmonella typhimurium LT2 Site: position = -76 score = 4.03213 sequence = TAGTACTACAA Site: position = -140 score = 5.48313 sequence = TTGTAGTACAA Site: position = -119 score = 4.05878 sequence = TTGTACTACAT Gene: STM3830: D-Galactonate repressor DgoR, GntR family	Citrobacter koseri ATCC BAA-895	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -76 score = 4.75763 sequence = TAGTAGTACAA Site: position = -119 score = 4.05878 sequence = TTGTACTACAT Site: position = -140 score = 5.48313 sequence = TTGTAGTACAA Gene: KPN_04098: D-Galactonate repressor DgoR, GntR family	* Enterobacter sp. 638 Site: position = -76 score = 4.33761 sequence = TTGTACTGCAA Site: position = -119 score = 4.05878 sequence = TTGTACTACAT Site: position = -140 score = 5.48313 sequence = TTGTAGTACAA Gene: Ent638_0006: D-Galactonate repressor DgoR, GntR family	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -68 score = 3.30663 sequence = AGGTACTACAA Site: position = -24 score = 3.91758 sequence = TTGTGCTGCAA Site: position = -89 score = 5.48313 sequence = TTGTAGTACAA Gene: Spro_0041: D-Galactonate repressor DgoR, GntR family	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -129 score = 4.03213 sequence = TGGTACTACAA Site: position = -150 score = 5.48313 sequence = TTGTAGTACAA Gene: ECA4419: D-Galactonate repressor DgoR, GntR family	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	D-Galactonate repressor DgoR, GntR family
dgoK	Escherichia coli str. K-12 substr. MG1655 Gene: b3693: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Salmonella typhimurium LT2 Gene: STM3829: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04097: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Enterobacter sp. 638 Gene: Ent638_0007: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0042: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4418: 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58)
dgoA	Escherichia coli str. K-12 substr. MG1655 Gene: b4477: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04096: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	Enterobacter sp. 638 Gene: Ent638_0008: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0043: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4417: 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21)
dgoD	Escherichia coli str. K-12 substr. MG1655 Gene: b4478: Galactonate dehydratase (EC 4.2.1.6)	Salmonella typhimurium LT2 Gene: STM3828: Galactonate dehydratase (EC 4.2.1.6)	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04095: Galactonate dehydratase (EC 4.2.1.6)	Enterobacter sp. 638 Gene: Ent638_0009: Galactonate dehydratase (EC 4.2.1.6)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0044: Galactonate dehydratase (EC 4.2.1.6)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4416: Galactonate dehydratase (EC 4.2.1.6)	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Galactonate dehydratase (EC 4.2.1.6)
dgoT	Escherichia coli str. K-12 substr. MG1655 Gene: b3691: D-galactonate transport	Salmonella typhimurium LT2 Gene: STM3827: D-galactonate transport	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04094: D-galactonate transport	Enterobacter sp. 638 Gene: Ent638_0010: D-galactonate transport	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0045: D-galactonate transport	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA4415: D-galactonate transport	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	D-galactonate transport

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog DgoR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --