Regulog AgaR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | N-acetylgalactosamine utilization |
| Effector: | N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - AgaR
- By TF family - DeoR
- By effector - N-acetylgalactosamine-6-phosphate
- By effector - Galactosamine-6-phosphate
- By pathway - N-acetylgalactosamine utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 9 | 3 |
| Salmonella typhimurium LT2 | ||
| Citrobacter koseri ATCC BAA-895 | 9 | 3 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | ||
| Enterobacter sp. 638 | 12 | 3 |
| Erwinia amylovora ATCC 49946 | ||
| Yersinia pestis KIM | ||
| Serratia proteamaculans 568 | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ||
| Edwardsiella tarda EIB202 | ||
| Proteus mirabilis HI4320 | ||
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| agaS |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -150 score = 5.63346 sequence = ATTTCGTTTTATTTC Site: position = -119 score = 5.1155 sequence = CTTTCAGTTTCTTTT Gene: b3136: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Citrobacter koseri ATCC BAA-895 Site: position = -119 score = 5.44751 sequence = CTTTCGATTTCTTTT Site: position = -252 score = 5.2971 sequence = CTTTCTTTTTCTTTC Site: position = -150 score = 5.68728 sequence = TTTTCGTTTTATTTC Gene: CKO_04536: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Enterobacter sp. 638 Site: position = -144 score = 5.68728 sequence = TTTTCGTTTTATTTC Site: position = -113 score = 4.6128 sequence = CTTTCACTTTCCTTT Gene: Ent638_3577: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: y3218: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Gene: Spro_2578: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: plu0834: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaY |
Gene: b3137: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
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Gene: CKO_04537: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
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Gene: Ent638_3578: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
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Gene: y3229: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
Gene: Spro_2579: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
|
Gene: ETAE_2526: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
Gene: PMI2145: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
Gene: plu0839: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-) |
| agaB |
Gene: b3138: PTS system, galactosamine-specific IIB component (EC 2.7.1.69) |
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Gene: Ent638_3579: PTS system, galactosamine-specific IIB component (EC 2.7.1.69) |
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PTS system, galactosamine-specific IIB component (EC 2.7.1.69) |
| agaC |
Gene: b3139: PTS system, galactosamine-specific IIC component (EC 2.7.1.69) |
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Gene: Ent638_3580: PTS system, galactosamine-specific IIC component (EC 2.7.1.69) |
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PTS system, galactosamine-specific IIC component (EC 2.7.1.69) |
| agaD |
Gene: b3140: PTS system, galactosamine-specific IID component (EC 2.7.1.69) |
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Gene: Ent638_3581: PTS system, galactosamine-specific IID component (EC 2.7.1.69) |
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PTS system, galactosamine-specific IID component (EC 2.7.1.69) |
| agaI |
Gene: b3141: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Gene: Ent638_3582: Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
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Galactosamine-6-phosphate isomerase (EC 5.3.1.-) |
| agaZ |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -134 score = 5.35272 sequence = CTTTCATTATGTTTC Site: position = -90 score = 5.85709 sequence = CTTTCGTTTTATTTT Site: position = -229 score = 5.90906 sequence = CTTTCGTTTCATTTC Gene: b3132: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
|
*
Citrobacter koseri ATCC BAA-895 Site: position = -247 score = 5.90906 sequence = CTTTCGTTTCATTTC Site: position = -152 score = 5.35272 sequence = CTTTCATTATGTTTC Site: position = -108 score = 5.85709 sequence = CTTTCGTTTTATTTT Gene: CKO_04530: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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*
Enterobacter sp. 638 Site: position = -90 score = 5.85709 sequence = CTTTCGTTTTATTTT Site: position = -230 score = 5.90906 sequence = CTTTCGTTTCATTTC Site: position = -134 score = 5.58962 sequence = CTTTCGTTATGTTTC Gene: Ent638_3572: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Gene: y3217: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Gene: ETAE_2537: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
Gene: PMI2140: Tagatose-6-phosphate kinase (EC 2.7.1.144) |
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Tagatose-6-phosphate kinase (EC 2.7.1.144) |
| agaV |
Gene: b3133: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
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Gene: CKO_04531: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
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Gene: Ent638_3573: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69) |
| agaW |
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Gene: CKO_04532: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
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Gene: Ent638_3574: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69) |
| agaE |
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Gene: CKO_04533: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
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Gene: Ent638_3575: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69) |
| agaF |
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Gene: CKO_04534: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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Gene: Ent638_3576: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
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PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69) |
| agaA |
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Gene: CKO_04535: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: y3223: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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Gene: ETAE_2531: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
Gene: PMI2134: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
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N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25) |
| CRON 2. | |||||||||||||
| agaR |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -34 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: b3131: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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*
Citrobacter koseri ATCC BAA-895 Site: position = -35 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: CKO_04529: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Enterobacter sp. 638 Site: position = -35 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: Ent638_3571: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Gene: y3216: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Gene: PMI2141: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
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Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |