Regulog AgaR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine-6-phosphate; Galactosamine-6-phosphate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 19 sites [see more]

Member of regulog collections

By taxonomy - Enterobacteriales
By trascription factor - AgaR
By TF family - DeoR
By effector - N-acetylgalactosamine-6-phosphate
By effector - Galactosamine-6-phosphate
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	9	3
Salmonella typhimurium LT2
Citrobacter koseri ATCC BAA-895	9	3
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Enterobacter sp. 638	12	3
Erwinia amylovora ATCC 49946
Yersinia pestis KIM
Serratia proteamaculans 568
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
agaS	* Escherichia coli str. K-12 substr. MG1655 Site: position = -150 score = 5.63346 sequence = ATTTCGTTTTATTTC Site: position = -119 score = 5.1155 sequence = CTTTCAGTTTCTTTT Gene: b3136: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Salmonella typhimurium LT2	* Citrobacter koseri ATCC BAA-895 Site: position = -119 score = 5.44751 sequence = CTTTCGATTTCTTTT Site: position = -252 score = 5.2971 sequence = CTTTCTTTTTCTTTC Site: position = -150 score = 5.68728 sequence = TTTTCGTTTTATTTC Gene: CKO_04536: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	* Enterobacter sp. 638 Site: position = -144 score = 5.68728 sequence = TTTTCGTTTTATTTC Site: position = -113 score = 4.6128 sequence = CTTTCACTTTCCTTT Gene: Ent638_3577: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y3218: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Serratia proteamaculans 568 Gene: Spro_2578: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0834: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaY	Escherichia coli str. K-12 substr. MG1655 Gene: b3137: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04537: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3578: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y3229: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Serratia proteamaculans 568 Gene: Spro_2579: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202 Gene: ETAE_2526: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Proteus mirabilis HI4320 Gene: PMI2145: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0839: Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)	Tagatose-1,6-bisphosphate aldolase (EC 4.1.2.-)
agaB	Escherichia coli str. K-12 substr. MG1655 Gene: b3138: PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3579: PTS system, galactosamine-specific IIB component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, galactosamine-specific IIB component (EC 2.7.1.69)
agaC	Escherichia coli str. K-12 substr. MG1655 Gene: b3139: PTS system, galactosamine-specific IIC component (EC 2.7.1.69)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3580: PTS system, galactosamine-specific IIC component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, galactosamine-specific IIC component (EC 2.7.1.69)
agaD	Escherichia coli str. K-12 substr. MG1655 Gene: b3140: PTS system, galactosamine-specific IID component (EC 2.7.1.69)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3581: PTS system, galactosamine-specific IID component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, galactosamine-specific IID component (EC 2.7.1.69)
agaI	Escherichia coli str. K-12 substr. MG1655 Gene: b3141: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3582: Galactosamine-6-phosphate isomerase (EC 5.3.1.-)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Galactosamine-6-phosphate isomerase (EC 5.3.1.-)
agaZ	* Escherichia coli str. K-12 substr. MG1655 Site: position = -134 score = 5.35272 sequence = CTTTCATTATGTTTC Site: position = -90 score = 5.85709 sequence = CTTTCGTTTTATTTT Site: position = -229 score = 5.90906 sequence = CTTTCGTTTCATTTC Gene: b3132: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Salmonella typhimurium LT2	* Citrobacter koseri ATCC BAA-895 Site: position = -247 score = 5.90906 sequence = CTTTCGTTTCATTTC Site: position = -152 score = 5.35272 sequence = CTTTCATTATGTTTC Site: position = -108 score = 5.85709 sequence = CTTTCGTTTTATTTT Gene: CKO_04530: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	* Enterobacter sp. 638 Site: position = -90 score = 5.85709 sequence = CTTTCGTTTTATTTT Site: position = -230 score = 5.90906 sequence = CTTTCGTTTCATTTC Site: position = -134 score = 5.58962 sequence = CTTTCGTTATGTTTC Gene: Ent638_3572: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y3217: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202 Gene: ETAE_2537: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Proteus mirabilis HI4320 Gene: PMI2140: Tagatose-6-phosphate kinase (EC 2.7.1.144)	Photorhabdus luminescens subsp. laumondii TTO1	Tagatose-6-phosphate kinase (EC 2.7.1.144)
agaV	Escherichia coli str. K-12 substr. MG1655 Gene: b3133: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04531: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3573: PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, N-acetylgalactosamine-specific IIB component (EC 2.7.1.69)
agaW	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04532: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3574: PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, N-acetylgalactosamine-specific IIC component (EC 2.7.1.69)
agaE	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04533: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3575: PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, N-acetylgalactosamine-specific IID component (EC 2.7.1.69)
agaF	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04534: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_3576: PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	PTS system, N-acetylgalactosamine- and galactosamine-specific IIA component (EC 2.7.1.69)
agaA	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895 Gene: CKO_04535: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y3223: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202 Gene: ETAE_2531: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Proteus mirabilis HI4320 Gene: PMI2134: N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)	Photorhabdus luminescens subsp. laumondii TTO1	N-acetylgalactosamine-6-phosphate deacetylase (EC 3.5.1.25)

CRON 2.
agaR	* Escherichia coli str. K-12 substr. MG1655 Site: position = -34 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: b3131: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Salmonella typhimurium LT2	* Citrobacter koseri ATCC BAA-895 Site: position = -35 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: CKO_04529: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	* Enterobacter sp. 638 Site: position = -35 score = -1.07232 sequence = GAAATGAAACGAAAG Gene: Ent638_3571: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Erwinia amylovora ATCC 49946	Yersinia pestis KIM Gene: y3216: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320 Gene: PMI2141: Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family	Photorhabdus luminescens subsp. laumondii TTO1	Transcriptional repressor of N-acetylgalactosamine utilization, DeoR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --