Regulog YwbI - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | |
| Biological process: | Cell wall metabolism |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - LysR
- By pathway - Cell wall metabolism
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 3 | 2 |
| Bacillus amyloliquefaciens FZB42 | 3 | 2 |
| Bacillus pumilus SAFR-032 | 3 | 2 |
| Bacillus licheniformis DSM 13 | 2 | 1 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | ||
| Bacillus clausii KSM-K16 | ||
| Oceanobacillus iheyensis HTE831 | ||
| Paenibacillus sp. JDR-2 | 2 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| cidA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -60 score = 5.65724 sequence = ATATATATTTTACCTAT Gene: BSU38320: Holin-like protein CidA |
*
Bacillus amyloliquefaciens FZB42 Site: position = -60 score = 6.02232 sequence = ATATGTATTTTACCTAT Gene: RBAM_035580: Holin-like protein CidA |
*
Bacillus pumilus SAFR-032 Site: position = -120 score = 6.02232 sequence = ATATGTATTTTACCTAT Gene: BPUM_3486: Holin-like protein CidA |
*
Bacillus licheniformis DSM 13 Site: position = -62 score = 6.02232 sequence = ATATGTATTTTACCTAT Gene: BLi04057: Holin-like protein CidA |
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Gene: BC3669: Holin-like protein CidA |
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Paenibacillus sp. JDR-2 Site: position = -60 score = 5.6401 sequence = AAATGTATTTTACCTAT Gene: Pjdr2_1918: Holin-like protein CidA |
Holin-like protein CidA |
| ywbG |
Gene: BSU38330: Anti-holin factor controlling activity of murein hydrolases |
Gene: RBAM_035590: Anti-holin factor controlling activity of murein hydrolases |
Gene: BPUM_3487: Anti-holin factor controlling activity of murein hydrolases |
Gene: BLi04058: Anti-holin factor controlling activity of murein hydrolases |
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Gene: BC3670: Anti-holin factor controlling activity of murein hydrolases |
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Gene: Pjdr2_1919: Anti-holin factor controlling activity of murein hydrolases |
Anti-holin factor controlling activity of murein hydrolases |
| CRON 2. | ||||||||||||
| ywbI |
*
Bacillus subtilis subsp. subtilis str. 168 Site: position = -62 score = 5.65724 sequence = ATAGGTAAAATATATAT Gene: BSU38310: Transcriptional regulator, LysR family |
*
Bacillus amyloliquefaciens FZB42 Site: position = -63 score = 6.02232 sequence = ATAGGTAAAATACATAT Gene: RBAM_035570: Transcriptional regulator, LysR family |
*
Bacillus pumilus SAFR-032 Site: position = -62 score = 6.02232 sequence = ATAGGTAAAATACATAT Gene: BPUM_3485: Transcriptional regulator, LysR family |
2
Bacillus licheniformis DSM 13 Gene: BLi04054: Transcriptional regulator, LysR family Gene: BLi04053: Transcriptional regulator, LysR family |
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Gene: Pjdr2_1917: Transcriptional regulator, LysR family |
Transcriptional regulator, LysR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |