Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog YwbI - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode:
Biological process: Cell wall metabolism
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 2
Bacillus pumilus SAFR-032 3 2
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cidA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -60
score = 5.65724
sequence = ATATATATTTTACCTAT

Gene: BSU38320: Holin-like protein CidA
*
Bacillus amyloliquefaciens FZB42

Site:
position = -60
score = 6.02232
sequence = ATATGTATTTTACCTAT

Gene: RBAM_035580: Holin-like protein CidA
*
Bacillus pumilus SAFR-032

Site:
position = -120
score = 6.02232
sequence = ATATGTATTTTACCTAT

Gene: BPUM_3486: Holin-like protein CidA
*
Bacillus licheniformis DSM 13

Site:
position = -62
score = 6.02232
sequence = ATATGTATTTTACCTAT

Gene: BLi04057: Holin-like protein CidA
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3669: Holin-like protein CidA
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -60
score = 5.6401
sequence = AAATGTATTTTACCTAT

Gene: Pjdr2_1918: Holin-like protein CidA
Holin-like protein CidA
ywbG
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU38330: Anti-holin factor controlling activity of murein hydrolases
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_035590: Anti-holin factor controlling activity of murein hydrolases
 
Bacillus pumilus SAFR-032

Gene: BPUM_3487: Anti-holin factor controlling activity of murein hydrolases
 
Bacillus licheniformis DSM 13

Gene: BLi04058: Anti-holin factor controlling activity of murein hydrolases
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3670: Anti-holin factor controlling activity of murein hydrolases
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1919: Anti-holin factor controlling activity of murein hydrolases
Anti-holin factor controlling activity of murein hydrolases
 
CRON 2.
ywbI
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -62
score = 5.65724
sequence = ATAGGTAAAATATATAT

Gene: BSU38310: Transcriptional regulator, LysR family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -63
score = 6.02232
sequence = ATAGGTAAAATACATAT

Gene: RBAM_035570: Transcriptional regulator, LysR family
*
Bacillus pumilus SAFR-032

Site:
position = -62
score = 6.02232
sequence = ATAGGTAAAATACATAT

Gene: BPUM_3485: Transcriptional regulator, LysR family
 2
Bacillus licheniformis DSM 13

Gene: BLi04054: Transcriptional regulator, LysR family

Gene: BLi04053: Transcriptional regulator, LysR family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_1917: Transcriptional regulator, LysR family
Transcriptional regulator, LysR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD