Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog CitR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Citrate metabolism
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 2 2
Bacillus amyloliquefaciens FZB42 2 2
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13 2 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
citR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -33
score = 6.49148
sequence = TAATTAAAAATATTAATCA

Gene: BSU09430: Transcriptional regulator of citrate synthase, LysR family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -32
score = 6.28695
sequence = TAATTAAAACTTTTAATCA

Gene: RBAM_009690: Transcriptional regulator of citrate synthase, LysR family
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -30
score = 6.57715
sequence = TGATTAATAAAATTAATCA

Gene: BLi01009: Transcriptional regulator of citrate synthase, LysR family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -32
score = 6.46801
sequence = TGATTAAGATATTTAATCA

Gene: ABC4042: Transcriptional regulator of citrate synthase, LysR family
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional regulator of citrate synthase, LysR family
 
CRON 2.
citA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -94
score = 6.49148
sequence = TGATTAATATTTTTAATTA

Gene: BSU09440: Citrate synthase (si) (EC 2.3.3.1)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -90
score = 6.28695
sequence = TGATTAAAAGTTTTAATTA

Gene: RBAM_009700: Citrate synthase (si) (EC 2.3.3.1)
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -99
score = 6.57715
sequence = TGATTAATTTTATTAATCA

Gene: BLi01010: Citrate synthase (si) (EC 2.3.3.1)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -98
score = 6.46801
sequence = TGATTAAATATCTTAATCA

Gene: ABC4043: Citrate synthase (si) (EC 2.3.3.1)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Citrate synthase (si) (EC 2.3.3.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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