Statistics of regulated genes

Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	7	4
Salmonella typhimurium LT2	5	3
Citrobacter koseri ATCC BAA-895	5	2
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	5	2
Enterobacter sp. 638	5	2
Erwinia amylovora ATCC 49946	5	2
Yersinia pestis KIM	1	1
Serratia proteamaculans 568	2	1
Erwinia carotovora subsp. atroseptica SCRI1043	7	3
Edwardsiella tarda EIB202	5	2
Proteus mirabilis HI4320	7	3
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes													Function
CRON 1.
tsx	* Escherichia coli str. K-12 substr. MG1655 Site: position = -247 score = 4.51638 sequence = TGTTACTCTGCTTACA Gene: b0411: nucleoside-specific channel-forming protein	* Salmonella typhimurium LT2 Site: position = -248 score = 4.40195 sequence = TGTTGCCCTACTGACA Gene: STM0413: nucleoside-specific channel-forming protein	Citrobacter koseri ATCC BAA-895 Gene: CKO_02750: nucleoside-specific channel-forming protein	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_00363: nucleoside-specific channel-forming protein	Enterobacter sp. 638 Gene: Ent638_0879: nucleoside-specific channel-forming protein	* Erwinia amylovora ATCC 49946 Site: position = -215 score = 4.88172 sequence = TGTGATAAAAATCACA Gene: EAM_2589: nucleoside-specific channel-forming protein	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_2072: nucleoside-specific channel-forming protein	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -169 score = 4.68612 sequence = TGTGATTAAAATCACA Gene: ECA3796: nucleoside-specific channel-forming protein	Edwardsiella tarda EIB202 Gene: ETAE_2935: nucleoside-specific channel-forming protein	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	nucleoside-specific channel-forming protein
CRON 2.
nupG	* Escherichia coli str. K-12 substr. MG1655 Site: position = -163 score = 4.85411 sequence = TGTTATCCACATCACA Site: position = -78 score = 4.55113 sequence = TGATAGAATCCCATCA Gene: b2964: nucleoside transporter, MFS family	* Salmonella typhimurium LT2 Site: position = -78 score = 4.6216 sequence = TGATAGAATCACACCA Gene: STM3113: nucleoside transporter, MFS family	* Citrobacter koseri ATCC BAA-895 Site: position = -78 score = 4.6216 sequence = TGATAGAATCACATCA Gene: CKO_04339: nucleoside transporter, MFS family	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -46 score = 4.82611 sequence = TGTTATTTTAAAAACA Gene: KPN_03396: nucleoside transporter, MFS family	* Enterobacter sp. 638 Site: position = -46 score = 4.49251 sequence = TGTTTACAAAACAACA Gene: Ent638_3369: nucleoside transporter, MFS family	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202 Gene: ETAE_2985: nucleoside transporter, MFS family	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	nucleoside transporter, MFS family
CRON 3.
deoC	* Escherichia coli str. K-12 substr. MG1655 Site: position = -60 score = 5.96514 sequence = TGTTAGAATACTAACA Gene: b4381: deoxyribose-phosphate aldolase	* Salmonella typhimurium LT2 Site: position = -44 score = 5.63866 sequence = TGTTAGAATATTAACA Gene: STM4567: deoxyribose-phosphate aldolase	* Citrobacter koseri ATCC BAA-895 Site: position = -45 score = 5.96514 sequence = TGTTAGAATACTAACA Gene: CKO_03410: deoxyribose-phosphate aldolase	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -69 score = 5.38679 sequence = TGTTACAATAGTAACA Site: position = -246 score = 5.73899 sequence = TGTTAGAATTATCACA Gene: KPN_04837: deoxyribose-phosphate aldolase	* Enterobacter sp. 638 Site: position = -62 score = 5.91567 sequence = TGTTAGAATACTCACA Gene: Ent638_0541: deoxyribose-phosphate aldolase	* Erwinia amylovora ATCC 49946 Site: position = -230 score = 4.93679 sequence = TGTGATAATTCTAACA Site: position = -78 score = 5.66406 sequence = TGTTATAATCCTCACA Gene: EAM_0615: deoxyribose-phosphate aldolase	Yersinia pestis KIM Gene: y3743: deoxyribose-phosphate aldolase	Serratia proteamaculans 568 Gene: Spro_0660: deoxyribose-phosphate aldolase	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -185 score = 5.42423 sequence = TGTTGAAATAATCACA Gene: ECA0727: deoxyribose-phosphate aldolase	* Edwardsiella tarda EIB202 Site: position = -104 score = 5.32346 sequence = TGTTCAAATAATCACA Gene: ETAE_0486: deoxyribose-phosphate aldolase	* Proteus mirabilis HI4320 Site: position = -302 score = 4.28324 sequence = TGTGATTCTGATCACA Site: position = -259 score = 4.03876 sequence = TTTTATTATTGTGACA Gene: PMI2416: deoxyribose-phosphate aldolase	Photorhabdus luminescens subsp. laumondii TTO1	deoxyribose-phosphate aldolase
deoA	Escherichia coli str. K-12 substr. MG1655 Gene: b4382: thymidine phosphorylase	Salmonella typhimurium LT2 Gene: STM4568: thymidine phosphorylase	Citrobacter koseri ATCC BAA-895 Gene: CKO_03409: thymidine phosphorylase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04838: thymidine phosphorylase	Enterobacter sp. 638 Gene: Ent638_0542: thymidine phosphorylase	Erwinia amylovora ATCC 49946 Gene: EAM_0616: thymidine phosphorylase	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_0661: thymidine phosphorylase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0728: thymidine phosphorylase	Edwardsiella tarda EIB202 Gene: ETAE_0487: thymidine phosphorylase	Proteus mirabilis HI4320 Gene: PMI2415: thymidine phosphorylase	Photorhabdus luminescens subsp. laumondii TTO1	thymidine phosphorylase
deoB	Escherichia coli str. K-12 substr. MG1655 Gene: b4383: phosphopentomutase	Salmonella typhimurium LT2 Gene: STM4569: phosphopentomutase	Citrobacter koseri ATCC BAA-895 Gene: CKO_03408: phosphopentomutase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04839: phosphopentomutase	Enterobacter sp. 638 Gene: Ent638_0543: phosphopentomutase	Erwinia amylovora ATCC 49946 Gene: EAM_0617: phosphopentomutase	Yersinia pestis KIM Gene: y3741: phosphopentomutase	Serratia proteamaculans 568 Gene: Spro_0662: phosphopentomutase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0729: phosphopentomutase	Edwardsiella tarda EIB202 Gene: ETAE_0488: phosphopentomutase	Proteus mirabilis HI4320 Gene: PMI2414: phosphopentomutase	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0521: phosphopentomutase	phosphopentomutase
deoD	Escherichia coli str. K-12 substr. MG1655 Gene: b4384: purine-nucleoside phosphorylase	Salmonella typhimurium LT2 Gene: STM4570: purine-nucleoside phosphorylase	Citrobacter koseri ATCC BAA-895 Gene: CKO_03407: purine-nucleoside phosphorylase	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_04840: purine-nucleoside phosphorylase	Enterobacter sp. 638 Gene: Ent638_0544: purine-nucleoside phosphorylase	Erwinia amylovora ATCC 49946 Gene: EAM_0618: purine-nucleoside phosphorylase	Yersinia pestis KIM Gene: y3740: purine-nucleoside phosphorylase	Serratia proteamaculans 568 Gene: Spro_0663: purine-nucleoside phosphorylase	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA0730: purine-nucleoside phosphorylase	Edwardsiella tarda EIB202 Gene: ETAE_0489: purine-nucleoside phosphorylase	Proteus mirabilis HI4320 Gene: PMI2413: purine-nucleoside phosphorylase	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0522: purine-nucleoside phosphorylase	purine-nucleoside phosphorylase
CRON 4.
deoC2	Escherichia coli str. K-12 substr. MG1655	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638	Erwinia amylovora ATCC 49946	* Yersinia pestis KIM Site: position = -44 score = 5.26692 sequence = TGTTATGATTATCACA Site: position = -105 score = 4.25663 sequence = TGTAATTTAAATAACA Gene: y2860: deoxyribose-phosphate aldolase	* Serratia proteamaculans 568 Site: position = -59 score = 5.46638 sequence = TGTTATTATTCTAACA Site: position = -165 score = 4.78595 sequence = TGTTACTTAAATAACA Gene: Spro_1632: deoxyribose-phosphate aldolase	* Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -79 score = 4.285 sequence = TGTTATTTTTGTGACA Site: position = -109 score = 5.46077 sequence = TGTTATTAAAATAACA Gene: ECA2684: deoxyribose-phosphate aldolase	Edwardsiella tarda EIB202	* Proteus mirabilis HI4320 Site: position = -54 score = 4.7647 sequence = TGTTGCCAAACTAACA Site: position = -105 score = 4.47725 sequence = TGTTATTTAAATATCA Site: position = -146 score = 5.36348 sequence = TGTTAGAATAGTTACA Gene: PMI3512: deoxyribose-phosphate aldolase	Photorhabdus luminescens subsp. laumondii TTO1	deoxyribose-phosphate aldolase
deoR	Escherichia coli str. K-12 substr. MG1655 Gene: b0840: transcriptional repressor for deoxyribose operon	Salmonella typhimurium LT2 Gene: STM0864: transcriptional repressor for deoxyribose operon	Citrobacter koseri ATCC BAA-895 Gene: CKO_02269: transcriptional repressor for deoxyribose operon	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_00872: transcriptional repressor for deoxyribose operon	Enterobacter sp. 638 Gene: Ent638_1331: transcriptional repressor for deoxyribose operon	Erwinia amylovora ATCC 49946 Gene: EAM_0630: transcriptional repressor for deoxyribose operon	Yersinia pestis KIM Gene: y2861: transcriptional repressor for deoxyribose operon	Serratia proteamaculans 568 Gene: Spro_1631: transcriptional repressor for deoxyribose operon	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA2685: transcriptional repressor for deoxyribose operon	Edwardsiella tarda EIB202 Gene: ETAE_2261: transcriptional repressor for deoxyribose operon	Proteus mirabilis HI4320 Gene: PMI3511: transcriptional repressor for deoxyribose operon	Photorhabdus luminescens subsp. laumondii TTO1	transcriptional repressor for deoxyribose operon
CRON 5.
nupC	* Escherichia coli str. K-12 substr. MG1655 Site: position = -180 score = 4.42643 sequence = TGTTAGCACATTTACA Gene: b2393: nucleoside transporter, NUP family	Salmonella typhimurium LT2 Gene: STM2409: nucleoside transporter, NUP family	Citrobacter koseri ATCC BAA-895 Gene: CKO_00402: nucleoside transporter, NUP family	Klebsiella pneumoniae subsp. pneumoniae MGH 78578	Enterobacter sp. 638 Gene: Ent638_2927: nucleoside transporter, NUP family	Erwinia amylovora ATCC 49946 Gene: EAM_2379: nucleoside transporter, NUP family	Yersinia pestis KIM	2 Serratia proteamaculans 568 Gene: Spro_4861: nucleoside transporter, NUP family Gene: Spro_3416: nucleoside transporter, NUP family	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3183: nucleoside transporter, NUP family	* Edwardsiella tarda EIB202 Site: position = -234 score = 4.50172 sequence = TGCTATGCTAATCACA Gene: ETAE_1141: nucleoside transporter, NUP family	* Proteus mirabilis HI4320 Site: position = -77 score = 5.00908 sequence = TGTGACAATAATCACA Gene: PMI1822: nucleoside transporter, NUP family	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu1399: nucleoside transporter, NUP family	nucleoside transporter, NUP family

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