Regulog DeoR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleoside utilization |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - DeoR
- By pathway - Deoxyribonucleoside utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 7 | 4 |
| Salmonella typhimurium LT2 | 5 | 3 |
| Citrobacter koseri ATCC BAA-895 | 5 | 2 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 5 | 2 |
| Enterobacter sp. 638 | 5 | 2 |
| Erwinia amylovora ATCC 49946 | 5 | 2 |
| Yersinia pestis KIM | 1 | 1 |
| Serratia proteamaculans 568 | 2 | 1 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 7 | 3 |
| Edwardsiella tarda EIB202 | 5 | 2 |
| Proteus mirabilis HI4320 | 7 | 3 |
| Photorhabdus luminescens subsp. laumondii TTO1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| tsx |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -247 score = 4.51638 sequence = TGTTACTCTGCTTACA Gene: b0411: nucleoside-specific channel-forming protein |
*
Salmonella typhimurium LT2 Site: position = -248 score = 4.40195 sequence = TGTTGCCCTACTGACA Gene: STM0413: nucleoside-specific channel-forming protein |
Gene: CKO_02750: nucleoside-specific channel-forming protein |
Gene: KPN_00363: nucleoside-specific channel-forming protein |
Gene: Ent638_0879: nucleoside-specific channel-forming protein |
*
Erwinia amylovora ATCC 49946 Site: position = -215 score = 4.88172 sequence = TGTGATAAAAATCACA Gene: EAM_2589: nucleoside-specific channel-forming protein |
|
Gene: Spro_2072: nucleoside-specific channel-forming protein |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -169 score = 4.68612 sequence = TGTGATTAAAATCACA Gene: ECA3796: nucleoside-specific channel-forming protein |
Gene: ETAE_2935: nucleoside-specific channel-forming protein |
|
|
nucleoside-specific channel-forming protein |
| CRON 2. | |||||||||||||
| nupG |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -163 score = 4.85411 sequence = TGTTATCCACATCACA Site: position = -78 score = 4.55113 sequence = TGATAGAATCCCATCA Gene: b2964: nucleoside transporter, MFS family |
*
Salmonella typhimurium LT2 Site: position = -78 score = 4.6216 sequence = TGATAGAATCACACCA Gene: STM3113: nucleoside transporter, MFS family |
*
Citrobacter koseri ATCC BAA-895 Site: position = -78 score = 4.6216 sequence = TGATAGAATCACATCA Gene: CKO_04339: nucleoside transporter, MFS family |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -46 score = 4.82611 sequence = TGTTATTTTAAAAACA Gene: KPN_03396: nucleoside transporter, MFS family |
*
Enterobacter sp. 638 Site: position = -46 score = 4.49251 sequence = TGTTTACAAAACAACA Gene: Ent638_3369: nucleoside transporter, MFS family |
|
|
|
|
Gene: ETAE_2985: nucleoside transporter, MFS family |
|
|
nucleoside transporter, MFS family |
| CRON 3. | |||||||||||||
| deoC |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -60 score = 5.96514 sequence = TGTTAGAATACTAACA Gene: b4381: deoxyribose-phosphate aldolase |
*
Salmonella typhimurium LT2 Site: position = -44 score = 5.63866 sequence = TGTTAGAATATTAACA Gene: STM4567: deoxyribose-phosphate aldolase |
*
Citrobacter koseri ATCC BAA-895 Site: position = -45 score = 5.96514 sequence = TGTTAGAATACTAACA Gene: CKO_03410: deoxyribose-phosphate aldolase |
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -69 score = 5.38679 sequence = TGTTACAATAGTAACA Site: position = -246 score = 5.73899 sequence = TGTTAGAATTATCACA Gene: KPN_04837: deoxyribose-phosphate aldolase |
*
Enterobacter sp. 638 Site: position = -62 score = 5.91567 sequence = TGTTAGAATACTCACA Gene: Ent638_0541: deoxyribose-phosphate aldolase |
*
Erwinia amylovora ATCC 49946 Site: position = -230 score = 4.93679 sequence = TGTGATAATTCTAACA Site: position = -78 score = 5.66406 sequence = TGTTATAATCCTCACA Gene: EAM_0615: deoxyribose-phosphate aldolase |
Gene: y3743: deoxyribose-phosphate aldolase |
Gene: Spro_0660: deoxyribose-phosphate aldolase |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -185 score = 5.42423 sequence = TGTTGAAATAATCACA Gene: ECA0727: deoxyribose-phosphate aldolase |
*
Edwardsiella tarda EIB202 Site: position = -104 score = 5.32346 sequence = TGTTCAAATAATCACA Gene: ETAE_0486: deoxyribose-phosphate aldolase |
*
Proteus mirabilis HI4320 Site: position = -302 score = 4.28324 sequence = TGTGATTCTGATCACA Site: position = -259 score = 4.03876 sequence = TTTTATTATTGTGACA Gene: PMI2416: deoxyribose-phosphate aldolase |
|
deoxyribose-phosphate aldolase |
| deoA |
Gene: b4382: thymidine phosphorylase |
Gene: STM4568: thymidine phosphorylase |
Gene: CKO_03409: thymidine phosphorylase |
Gene: KPN_04838: thymidine phosphorylase |
Gene: Ent638_0542: thymidine phosphorylase |
Gene: EAM_0616: thymidine phosphorylase |
|
Gene: Spro_0661: thymidine phosphorylase |
Gene: ECA0728: thymidine phosphorylase |
Gene: ETAE_0487: thymidine phosphorylase |
Gene: PMI2415: thymidine phosphorylase |
|
thymidine phosphorylase |
| deoB |
Gene: b4383: phosphopentomutase |
Gene: STM4569: phosphopentomutase |
Gene: CKO_03408: phosphopentomutase |
Gene: KPN_04839: phosphopentomutase |
Gene: Ent638_0543: phosphopentomutase |
Gene: EAM_0617: phosphopentomutase |
Gene: y3741: phosphopentomutase |
Gene: Spro_0662: phosphopentomutase |
Gene: ECA0729: phosphopentomutase |
Gene: ETAE_0488: phosphopentomutase |
Gene: PMI2414: phosphopentomutase |
Gene: plu0521: phosphopentomutase |
phosphopentomutase |
| deoD |
Gene: b4384: purine-nucleoside phosphorylase |
Gene: STM4570: purine-nucleoside phosphorylase |
Gene: CKO_03407: purine-nucleoside phosphorylase |
Gene: KPN_04840: purine-nucleoside phosphorylase |
Gene: Ent638_0544: purine-nucleoside phosphorylase |
Gene: EAM_0618: purine-nucleoside phosphorylase |
Gene: y3740: purine-nucleoside phosphorylase |
Gene: Spro_0663: purine-nucleoside phosphorylase |
Gene: ECA0730: purine-nucleoside phosphorylase |
Gene: ETAE_0489: purine-nucleoside phosphorylase |
Gene: PMI2413: purine-nucleoside phosphorylase |
Gene: plu0522: purine-nucleoside phosphorylase |
purine-nucleoside phosphorylase |
| CRON 4. | |||||||||||||
| deoC2 |
|
|
|
|
|
|
*
Yersinia pestis KIM Site: position = -44 score = 5.26692 sequence = TGTTATGATTATCACA Site: position = -105 score = 4.25663 sequence = TGTAATTTAAATAACA Gene: y2860: deoxyribose-phosphate aldolase |
*
Serratia proteamaculans 568 Site: position = -59 score = 5.46638 sequence = TGTTATTATTCTAACA Site: position = -165 score = 4.78595 sequence = TGTTACTTAAATAACA Gene: Spro_1632: deoxyribose-phosphate aldolase |
*
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -79 score = 4.285 sequence = TGTTATTTTTGTGACA Site: position = -109 score = 5.46077 sequence = TGTTATTAAAATAACA Gene: ECA2684: deoxyribose-phosphate aldolase |
|
*
Proteus mirabilis HI4320 Site: position = -54 score = 4.7647 sequence = TGTTGCCAAACTAACA Site: position = -105 score = 4.47725 sequence = TGTTATTTAAATATCA Site: position = -146 score = 5.36348 sequence = TGTTAGAATAGTTACA Gene: PMI3512: deoxyribose-phosphate aldolase |
|
deoxyribose-phosphate aldolase |
| deoR |
Gene: b0840: transcriptional repressor for deoxyribose operon |
Gene: STM0864: transcriptional repressor for deoxyribose operon |
Gene: CKO_02269: transcriptional repressor for deoxyribose operon |
Gene: KPN_00872: transcriptional repressor for deoxyribose operon |
Gene: Ent638_1331: transcriptional repressor for deoxyribose operon |
Gene: EAM_0630: transcriptional repressor for deoxyribose operon |
Gene: y2861: transcriptional repressor for deoxyribose operon |
Gene: Spro_1631: transcriptional repressor for deoxyribose operon |
Gene: ECA2685: transcriptional repressor for deoxyribose operon |
Gene: ETAE_2261: transcriptional repressor for deoxyribose operon |
Gene: PMI3511: transcriptional repressor for deoxyribose operon |
|
transcriptional repressor for deoxyribose operon |
| CRON 5. | |||||||||||||
| nupC |
*
Escherichia coli str. K-12 substr. MG1655 Site: position = -180 score = 4.42643 sequence = TGTTAGCACATTTACA Gene: b2393: nucleoside transporter, NUP family |
Gene: STM2409: nucleoside transporter, NUP family |
Gene: CKO_00402: nucleoside transporter, NUP family |
|
Gene: Ent638_2927: nucleoside transporter, NUP family |
Gene: EAM_2379: nucleoside transporter, NUP family |
|
2
Serratia proteamaculans 568 Gene: Spro_4861: nucleoside transporter, NUP family Gene: Spro_3416: nucleoside transporter, NUP family |
Gene: ECA3183: nucleoside transporter, NUP family |
*
Edwardsiella tarda EIB202 Site: position = -234 score = 4.50172 sequence = TGCTATGCTAATCACA Gene: ETAE_1141: nucleoside transporter, NUP family |
*
Proteus mirabilis HI4320 Site: position = -77 score = 5.00908 sequence = TGTGACAATAATCACA Gene: PMI1822: nucleoside transporter, NUP family |
Gene: plu1399: nucleoside transporter, NUP family |
nucleoside transporter, NUP family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |