Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MsmR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Alpha-galactosides utilization
Effector: Alpha-galactosides
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 5 1
Bacillus amyloliquefaciens FZB42 5 1
Bacillus pumilus SAFR-032 5 1
Bacillus licheniformis DSM 13 5 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125 5 1
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
msmR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -88
score = 5.53766
sequence = TATTGTAACCGCTTACTTTT

Gene: BSU30260: Transcriptional regulator of alpha-galactoside utilization, LacI family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -93
score = 5.40966
sequence = TGTTGAAAACGCTTACTCTC

Gene: RBAM_027180: Transcriptional regulator of alpha-galactoside utilization, LacI family
*
Bacillus pumilus SAFR-032

Site:
position = -80
score = 4.39462
sequence = ACTTGAAAGCGCTTTACCAA

Gene: BPUM_1754: Transcriptional regulator of alpha-galactoside utilization, LacI family
*
Bacillus licheniformis DSM 13

Site:
position = -77
score = 4.63121
sequence = TATTGAAAACTTTTACCTTG

Gene: BLi01139: Transcriptional regulator of alpha-galactoside utilization, LacI family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -97
score = 5.84411
sequence = TATTGAAAACGCTTACCCTA

Gene: BH2227: Transcriptional regulator of alpha-galactoside utilization, LacI family
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5455: Transcriptional regulator of alpha-galactoside utilization, LacI family
Transcriptional regulator of alpha-galactoside utilization, LacI family
msmE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU30270: Multiple sugar ABC transporter, stachyose-binding protein
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_027190: Multiple sugar ABC transporter, stachyose-binding protein
 
Bacillus pumilus SAFR-032

Gene: BPUM_1753: Multiple sugar ABC transporter, stachyose-binding protein
*
Bacillus licheniformis DSM 13

Site:
position = -53
score = 4.87953
sequence = AAATGAAAGCGCTTTTTATT

Gene: BLi01140: Multiple sugar ABC transporter, stachyose-binding protein
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2226: Multiple sugar ABC transporter, stachyose-binding protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Multiple sugar ABC transporter, stachyose-binding protein
msmF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU30280: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_027200: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
 
Bacillus pumilus SAFR-032

Gene: BPUM_1752: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
 
Bacillus licheniformis DSM 13

Gene: BLi01141: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2225: Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Multiple sugar ABC transporter, membrane-spanning permease protein MsmF
msmG
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU30290: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_027210: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
 
Bacillus pumilus SAFR-032

Gene: BPUM_1751: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
 
Bacillus licheniformis DSM 13

Gene: BLi01142: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2224: Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Multiple sugar ABC transporter, membrane-spanning permease protein MsmG
melA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU30300: Alpha-galactosidase (EC 3.2.1.22)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_027220: Alpha-galactosidase (EC 3.2.1.22)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1750: Alpha-galactosidase (EC 3.2.1.22)
 
Bacillus licheniformis DSM 13

Gene: BLi01143: Alpha-galactosidase (EC 3.2.1.22)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2228: Alpha-galactosidase (EC 3.2.1.22)
 
Bacillus clausii KSM-K16

Gene: ABC0732: Alpha-galactosidase (EC 3.2.1.22)
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0045: Alpha-galactosidase (EC 3.2.1.22)
Alpha-galactosidase (EC 3.2.1.22)
agaL
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2223: Alpha-galactosidase (EC 3.2.1.22)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5454: Alpha-galactosidase (EC 3.2.1.22)
Alpha-galactosidase (EC 3.2.1.22)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD