Regulog GlnR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Nitrogen assimilation |
| Effector: | Feedback-inhibited GlnA, glutamine synthetase |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - MerR
- By effector - Feedback-inhibited GlnA, glutamine synthetase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 6 | 3 |
| Bacillus amyloliquefaciens FZB42 | 5 | 2 |
| Bacillus pumilus SAFR-032 | 3 | 2 |
| Bacillus licheniformis DSM 13 | 3 | 2 |
| Anoxybacillus flavithermus WK1 | 3 | 2 |
| Geobacillus kaustophilus HTA426 | 16 | 3 |
| Bacillus cereus ATCC 14579 | 4 | 4 |
| Bacillus halodurans C-125 | 13 | 3 |
| Bacillus clausii KSM-K16 | 1 | 1 |
| Oceanobacillus iheyensis HTE831 | 2 | 1 |
| Paenibacillus sp. JDR-2 | 7 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| glnR |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -83 score = 5.27987 sequence = ATGTTAAGAATCCTTACAT Site: position = -60 score = 5.01197 sequence = TTGACACATAATATAACAT Gene: BSU17450: Transcriptional regulator of nitrogen excess response, MerR family |
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Bacillus amyloliquefaciens FZB42 Site: position = -83 score = 5.27987 sequence = ATGTTAAGATTCCTTACAT Site: position = -60 score = 5.02699 sequence = TTGACACAAAATATAACAT Gene: RBAM_017250: Transcriptional regulator of nitrogen excess response, MerR family |
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Bacillus pumilus SAFR-032 Site: position = -83 score = 5.28827 sequence = ATGTTAATATTCCTAACAT Site: position = -60 score = 5.10014 sequence = TTGACATATAATATAACAT Site: position = -55 score = 4.63958 sequence = ATATAATATAACATGACAT Gene: BPUM_1636: Transcriptional regulator of nitrogen excess response, MerR family |
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Bacillus licheniformis DSM 13 Site: position = -82 score = 5.15183 sequence = ATGTAAAGAATCCTTACAT Site: position = -59 score = 5.01197 sequence = TTGACACATTATATAACAT Gene: BLi01992: Transcriptional regulator of nitrogen excess response, MerR family |
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Anoxybacillus flavithermus WK1 Site: position = -83 score = 4.84934 sequence = ATGTGATAAAATGTAACGT Site: position = -60 score = 4.81044 sequence = TTGACATATAAGTTAACAT Gene: Aflv_1508: Transcriptional regulator of nitrogen excess response, MerR family |
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Geobacillus kaustophilus HTA426 Site: position = -82 score = 4.46665 sequence = TTGTGAGGAAACATCACGT Gene: GK1326: Transcriptional regulator of nitrogen excess response, MerR family |
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Bacillus cereus ATCC 14579 Site: position = -84 score = 5.3264 sequence = ATGTAAGAAAAGCTAACAT Site: position = -62 score = 4.78423 sequence = TTGACACTAAACATAACAT Gene: BC3706: Transcriptional regulator of nitrogen excess response, MerR family |
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Oceanobacillus iheyensis HTE831 Site: position = -81 score = 5.46946 sequence = ATGTTAGAAATACTAACAT Gene: OB1650: Transcriptional regulator of nitrogen excess response, MerR family |
Gene: Pjdr2_2618: Transcriptional regulator of nitrogen excess response, MerR family |
Transcriptional regulator of nitrogen excess response, MerR family |
| glnA |
Gene: BSU17460: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RBAM_017260: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: BPUM_1637: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: BLi01993: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Aflv_1507: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: GK1327: Glutamine synthetase type I (EC 6.3.1.2) |
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Gene: BH2360: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: ABC2179: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: OB1651: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Pjdr2_2619: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 2. | ||||||||||||
| tnrA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -82 score = 5.37026 sequence = ATGTTAGAAAATATGACAA Gene: BSU13310: Transcriptional regulator of nitrogen assimilation, MerR family |
Gene: RBAM_013130: Transcriptional regulator of nitrogen assimilation, MerR family |
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Bacillus pumilus SAFR-032 Site: position = -122 score = 4.26715 sequence = TTGTCAACTTTCCTTCCAT Site: position = -81 score = 4.8831 sequence = GTGTTATATTTTCTAACAA Gene: BPUM_1230: Transcriptional regulator of nitrogen assimilation, MerR family |
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Bacillus licheniformis DSM 13 Site: position = -82 score = 4.92529 sequence = ATGTTAGATTTTCTGACAG Gene: BLi01490: Transcriptional regulator of nitrogen assimilation, MerR family |
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Anoxybacillus flavithermus WK1 Site: position = -114 score = 5.20135 sequence = TTGTTACTTTTTATAACAT Site: position = -83 score = 5.05869 sequence = TTGTTACTTTTTATAACAA Site: position = -28 score = 5.50178 sequence = ATGTTATAAAATATGACAT Gene: Aflv_1544: Transcriptional regulator of nitrogen assimilation, MerR family |
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Geobacillus kaustophilus HTA426 Site: position = -87 score = 4.76327 sequence = ATGTTAATTTTATTTACAA Site: position = -34 score = 4.70526 sequence = ACGTTAGAAAATATAACGT Gene: GK1860: Transcriptional regulator of nitrogen assimilation, MerR family |
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Bacillus halodurans C-125 Site: position = -111 score = 5.36495 sequence = TTGTAAGAAAATCTAACAT Gene: BH1494: Transcriptional regulator of nitrogen assimilation, MerR family |
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Bacillus clausii KSM-K16 Site: position = -100 score = 5.36495 sequence = TTGTTAGATTTTCTTACAT Gene: ABC1760: Transcriptional regulator of nitrogen assimilation, MerR family |
Gene: OB0950: Transcriptional regulator of nitrogen assimilation, MerR family |
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Paenibacillus sp. JDR-2 Site: position = -303 score = 5.47798 sequence = TTGTTAGATAATCTAACAT Site: position = -42 score = 4.83615 sequence = GTGTTAGAAAACATTACAT Gene: Pjdr2_5154: Transcriptional regulator of nitrogen assimilation, MerR family |
Transcriptional regulator of nitrogen assimilation, MerR family |
| CRON 3. | ||||||||||||
| nrgA |
Gene: BSU36510: Ammonium transporter |
Gene: RBAM_033680: Ammonium transporter |
Gene: BPUM_3300: Ammonium transporter |
Gene: BLi03888: Ammonium transporter |
Gene: Aflv_1332: Ammonium transporter |
Gene: GK1452: Ammonium transporter |
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Bacillus cereus ATCC 14579 Site: position = -57 score = 5.10364 sequence = ATGaTAtgAAacaTAACAa Site: position = -127 score = 5.62451 sequence = ATGTTAtAtTTTCTAACAT Site: position = -34 score = 5.44331 sequence = ATGTTAtttTTTCTAACAT Gene: BC1156: Ammonium transporter |
Gene: BH3834: Ammonium transporter |
Gene: ABC3928: Ammonium transporter |
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Gene: Pjdr2_2141: Ammonium transporter |
Ammonium transporter |
| CRON 4. | ||||||||||||
| utrA |
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Geobacillus kaustophilus HTA426 Site: position = -202 score = 5.14291 sequence = ATGTAATAAAATGTGACAA Site: position = -225 score = 4.33829 sequence = GTGATAATAAATATAACAA Gene: GK1937: Urea ABC transporter, urea binding protein |
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Bacillus halodurans C-125 Site: position = -89 score = 4.75948 sequence = ATGTAACGATTTCTAACGA Site: position = -193 score = 4.99672 sequence = ATGTTATCTTTGATGACAA Site: position = -158 score = 4.57385 sequence = TTGTTAGAAAAGATTACAG Gene: BH0251: Urea ABC transporter, urea binding protein |
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Gene: Pjdr2_0557: Urea ABC transporter, urea binding protein |
Urea ABC transporter, urea binding protein |
| urtB |
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Gene: GK1936: Urea ABC transporter, permease protein UrtB |
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Gene: BH0250: Urea ABC transporter, permease protein UrtB |
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Gene: Pjdr2_0558: Urea ABC transporter, permease protein UrtB |
Urea ABC transporter, permease protein UrtB |
| urtC |
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Gene: GK1935: Urea ABC transporter, permease protein UrtC |
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Gene: BH0249: Urea ABC transporter, permease protein UrtC |
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Gene: Pjdr2_0559: Urea ABC transporter, permease protein UrtC |
Urea ABC transporter, permease protein UrtC |
| urtD |
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Gene: GK1934: Urea ABC transporter, ATPase protein UrtD |
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Gene: BH0248: Urea ABC transporter, ATPase protein UrtD |
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Gene: Pjdr2_0560: Urea ABC transporter, ATPase protein UrtD |
Urea ABC transporter, ATPase protein UrtD |
| urtE |
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Gene: GK1933: Urea ABC transporter, ATPase protein UrtE |
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Gene: BH0247: Urea ABC transporter, ATPase protein UrtE |
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Gene: Pjdr2_0561: Urea ABC transporter, ATPase protein UrtE |
Urea ABC transporter, ATPase protein UrtE |
| ureA |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -833 score = 5.05297 sequence = tTGTaAactTTTaTAACAT Gene: BSU36660: Urease gamma subunit (EC 3.5.1.5) |
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Bacillus amyloliquefaciens FZB42 Site: position = -204 score = 4.82967 sequence = ATGTAACCTTTCTTCACAT Gene: RBAM_033830: Urease gamma subunit (EC 3.5.1.5) |
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Gene: GK1932: Urease gamma subunit (EC 3.5.1.5) |
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Bacillus halodurans C-125 Site: position = -62 score = 4.99672 sequence = TTGTCATCAAAGATAACAT Site: position = -97 score = 4.57385 sequence = CTGTAATCTTTTCTAACAA Site: position = -166 score = 4.75948 sequence = TCGTTAGAAATCGTTACAT Gene: BH0252: Urease gamma subunit (EC 3.5.1.5) |
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Paenibacillus sp. JDR-2 Site: position = -85 score = 5.43635 sequence = ATGTCATATTACCTAACAT Gene: Pjdr2_4328: Urease gamma subunit (EC 3.5.1.5) |
Urease gamma subunit (EC 3.5.1.5) |
| ureB |
Gene: BSU36650: Urease beta subunit (EC 3.5.1.5) |
Gene: RBAM_033820: Urease beta subunit (EC 3.5.1.5) |
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Gene: GK1931: Urease beta subunit (EC 3.5.1.5) |
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Gene: BH0253: Urease beta subunit (EC 3.5.1.5) |
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Gene: Pjdr2_4327: Urease beta subunit (EC 3.5.1.5) |
Urease beta subunit (EC 3.5.1.5) |
| ureC |
Gene: BSU36640: Urease alpha subunit (EC 3.5.1.5) |
Gene: RBAM_033810: Urease alpha subunit (EC 3.5.1.5) |
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Gene: GK1930: Urease alpha subunit (EC 3.5.1.5) |
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Gene: BH0254: Urease alpha subunit (EC 3.5.1.5) |
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Gene: Pjdr2_4326: Urease alpha subunit (EC 3.5.1.5) |
Urease alpha subunit (EC 3.5.1.5) |
| ureE |
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Gene: GK1929: Urease accessory protein UreE |
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Gene: BH0255: Urease accessory protein UreE |
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Urease accessory protein UreE |
| ureF |
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Gene: GK1928: Urease accessory protein UreF |
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Gene: BH0256: Urease accessory protein UreF |
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Gene: Pjdr2_4325: Urease accessory protein UreF |
Urease accessory protein UreF |
| ureG |
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Gene: GK1927: Urease accessory protein UreG |
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Gene: BH0257: Urease accessory protein UreG |
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Gene: Pjdr2_4324: Urease accessory protein UreG |
Urease accessory protein UreG |
| ureD |
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Gene: GK1926: Urease accessory protein UreD |
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Gene: BH0258: Urease accessory protein UreD |
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Gene: Pjdr2_4323: Urease accessory protein UreD |
Urease accessory protein UreD |
| ureH |
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Gene: GK1925: Urease accessory protein |
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Urease accessory protein |
| CRON 5. | ||||||||||||
| gltP |
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Bacillus cereus ATCC 14579 Site: position = -218 score = 5.24627 sequence = ATGTGAGGTTTTCTGACAT Gene: BC1432: Glutamate-aspartate carrier protein |
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Glutamate-aspartate carrier protein |
| CRON 6. | ||||||||||||
| alsT |
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Bacillus cereus ATCC 14579 Site: position = -89 score = 5.45136 sequence = ATGTTATAAAACCTGACAT Site: position = -112 score = 4.21377 sequence = ATGTTAAAAGAGTTAACGT Gene: BC5051: Sodium/proton-dependent alanine carrier protein |
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Sodium/proton-dependent alanine carrier protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |