Regulog GlnR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Nitrogen assimilation
Effector:	Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 45 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - MerR
By effector - Feedback-inhibited GlnA, glutamine synthetase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	6	3
Bacillus amyloliquefaciens FZB42	5	2
Bacillus pumilus SAFR-032	3	2
Bacillus licheniformis DSM 13	3	2
Anoxybacillus flavithermus WK1	3	2
Geobacillus kaustophilus HTA426	16	3
Bacillus cereus ATCC 14579	4	4
Bacillus halodurans C-125	13	3
Bacillus clausii KSM-K16	1	1
Oceanobacillus iheyensis HTE831	2	1
Paenibacillus sp. JDR-2	7	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
glnR	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -83 score = 5.27987 sequence = ATGTTAAGAATCCTTACAT Site: position = -60 score = 5.01197 sequence = TTGACACATAATATAACAT Gene: BSU17450: Transcriptional regulator of nitrogen excess response, MerR family	* Bacillus amyloliquefaciens FZB42 Site: position = -83 score = 5.27987 sequence = ATGTTAAGATTCCTTACAT Site: position = -60 score = 5.02699 sequence = TTGACACAAAATATAACAT Gene: RBAM_017250: Transcriptional regulator of nitrogen excess response, MerR family	* Bacillus pumilus SAFR-032 Site: position = -83 score = 5.28827 sequence = ATGTTAATATTCCTAACAT Site: position = -60 score = 5.10014 sequence = TTGACATATAATATAACAT Site: position = -55 score = 4.63958 sequence = ATATAATATAACATGACAT Gene: BPUM_1636: Transcriptional regulator of nitrogen excess response, MerR family	* Bacillus licheniformis DSM 13 Site: position = -82 score = 5.15183 sequence = ATGTAAAGAATCCTTACAT Site: position = -59 score = 5.01197 sequence = TTGACACATTATATAACAT Gene: BLi01992: Transcriptional regulator of nitrogen excess response, MerR family	* Anoxybacillus flavithermus WK1 Site: position = -83 score = 4.84934 sequence = ATGTGATAAAATGTAACGT Site: position = -60 score = 4.81044 sequence = TTGACATATAAGTTAACAT Gene: Aflv_1508: Transcriptional regulator of nitrogen excess response, MerR family	* Geobacillus kaustophilus HTA426 Site: position = -82 score = 4.46665 sequence = TTGTGAGGAAACATCACGT Gene: GK1326: Transcriptional regulator of nitrogen excess response, MerR family	* Bacillus cereus ATCC 14579 Site: position = -84 score = 5.3264 sequence = ATGTAAGAAAAGCTAACAT Site: position = -62 score = 4.78423 sequence = TTGACACTAAACATAACAT Gene: BC3706: Transcriptional regulator of nitrogen excess response, MerR family	Bacillus halodurans C-125	Bacillus clausii KSM-K16	* Oceanobacillus iheyensis HTE831 Site: position = -81 score = 5.46946 sequence = ATGTTAGAAATACTAACAT Gene: OB1650: Transcriptional regulator of nitrogen excess response, MerR family	Paenibacillus sp. JDR-2 Gene: Pjdr2_2618: Transcriptional regulator of nitrogen excess response, MerR family	Transcriptional regulator of nitrogen excess response, MerR family
glnA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU17460: Glutamine synthetase type I (EC 6.3.1.2)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_017260: Glutamine synthetase type I (EC 6.3.1.2)	Bacillus pumilus SAFR-032 Gene: BPUM_1637: Glutamine synthetase type I (EC 6.3.1.2)	Bacillus licheniformis DSM 13 Gene: BLi01993: Glutamine synthetase type I (EC 6.3.1.2)	Anoxybacillus flavithermus WK1 Gene: Aflv_1507: Glutamine synthetase type I (EC 6.3.1.2)	Geobacillus kaustophilus HTA426 Gene: GK1327: Glutamine synthetase type I (EC 6.3.1.2)	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH2360: Glutamine synthetase type I (EC 6.3.1.2)	Bacillus clausii KSM-K16 Gene: ABC2179: Glutamine synthetase type I (EC 6.3.1.2)	Oceanobacillus iheyensis HTE831 Gene: OB1651: Glutamine synthetase type I (EC 6.3.1.2)	Paenibacillus sp. JDR-2 Gene: Pjdr2_2619: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

CRON 2.
tnrA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -82 score = 5.37026 sequence = ATGTTAGAAAATATGACAA Gene: BSU13310: Transcriptional regulator of nitrogen assimilation, MerR family	Bacillus amyloliquefaciens FZB42 Gene: RBAM_013130: Transcriptional regulator of nitrogen assimilation, MerR family	* Bacillus pumilus SAFR-032 Site: position = -122 score = 4.26715 sequence = TTGTCAACTTTCCTTCCAT Site: position = -81 score = 4.8831 sequence = GTGTTATATTTTCTAACAA Gene: BPUM_1230: Transcriptional regulator of nitrogen assimilation, MerR family	* Bacillus licheniformis DSM 13 Site: position = -82 score = 4.92529 sequence = ATGTTAGATTTTCTGACAG Gene: BLi01490: Transcriptional regulator of nitrogen assimilation, MerR family	* Anoxybacillus flavithermus WK1 Site: position = -114 score = 5.20135 sequence = TTGTTACTTTTTATAACAT Site: position = -83 score = 5.05869 sequence = TTGTTACTTTTTATAACAA Site: position = -28 score = 5.50178 sequence = ATGTTATAAAATATGACAT Gene: Aflv_1544: Transcriptional regulator of nitrogen assimilation, MerR family	* Geobacillus kaustophilus HTA426 Site: position = -87 score = 4.76327 sequence = ATGTTAATTTTATTTACAA Site: position = -34 score = 4.70526 sequence = ACGTTAGAAAATATAACGT Gene: GK1860: Transcriptional regulator of nitrogen assimilation, MerR family	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -111 score = 5.36495 sequence = TTGTAAGAAAATCTAACAT Gene: BH1494: Transcriptional regulator of nitrogen assimilation, MerR family	* Bacillus clausii KSM-K16 Site: position = -100 score = 5.36495 sequence = TTGTTAGATTTTCTTACAT Gene: ABC1760: Transcriptional regulator of nitrogen assimilation, MerR family	Oceanobacillus iheyensis HTE831 Gene: OB0950: Transcriptional regulator of nitrogen assimilation, MerR family	* Paenibacillus sp. JDR-2 Site: position = -303 score = 5.47798 sequence = TTGTTAGATAATCTAACAT Site: position = -42 score = 4.83615 sequence = GTGTTAGAAAACATTACAT Gene: Pjdr2_5154: Transcriptional regulator of nitrogen assimilation, MerR family	Transcriptional regulator of nitrogen assimilation, MerR family

CRON 3.
nrgA	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU36510: Ammonium transporter	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033680: Ammonium transporter	Bacillus pumilus SAFR-032 Gene: BPUM_3300: Ammonium transporter	Bacillus licheniformis DSM 13 Gene: BLi03888: Ammonium transporter	Anoxybacillus flavithermus WK1 Gene: Aflv_1332: Ammonium transporter	Geobacillus kaustophilus HTA426 Gene: GK1452: Ammonium transporter	* Bacillus cereus ATCC 14579 Site: position = -57 score = 5.10364 sequence = ATGaTAtgAAacaTAACAa Site: position = -127 score = 5.62451 sequence = ATGTTAtAtTTTCTAACAT Site: position = -34 score = 5.44331 sequence = ATGTTAtttTTTCTAACAT Gene: BC1156: Ammonium transporter	Bacillus halodurans C-125 Gene: BH3834: Ammonium transporter	Bacillus clausii KSM-K16 Gene: ABC3928: Ammonium transporter	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_2141: Ammonium transporter	Ammonium transporter

CRON 4.
utrA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	* Geobacillus kaustophilus HTA426 Site: position = -202 score = 5.14291 sequence = ATGTAATAAAATGTGACAA Site: position = -225 score = 4.33829 sequence = GTGATAATAAATATAACAA Gene: GK1937: Urea ABC transporter, urea binding protein	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -89 score = 4.75948 sequence = ATGTAACGATTTCTAACGA Site: position = -193 score = 4.99672 sequence = ATGTTATCTTTGATGACAA Site: position = -158 score = 4.57385 sequence = TTGTTAGAAAAGATTACAG Gene: BH0251: Urea ABC transporter, urea binding protein	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0557: Urea ABC transporter, urea binding protein	Urea ABC transporter, urea binding protein
urtB	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1936: Urea ABC transporter, permease protein UrtB	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0250: Urea ABC transporter, permease protein UrtB	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0558: Urea ABC transporter, permease protein UrtB	Urea ABC transporter, permease protein UrtB
urtC	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1935: Urea ABC transporter, permease protein UrtC	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0249: Urea ABC transporter, permease protein UrtC	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0559: Urea ABC transporter, permease protein UrtC	Urea ABC transporter, permease protein UrtC
urtD	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1934: Urea ABC transporter, ATPase protein UrtD	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0248: Urea ABC transporter, ATPase protein UrtD	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0560: Urea ABC transporter, ATPase protein UrtD	Urea ABC transporter, ATPase protein UrtD
urtE	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1933: Urea ABC transporter, ATPase protein UrtE	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0247: Urea ABC transporter, ATPase protein UrtE	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_0561: Urea ABC transporter, ATPase protein UrtE	Urea ABC transporter, ATPase protein UrtE
ureA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -833 score = 5.05297 sequence = tTGTaAactTTTaTAACAT Gene: BSU36660: Urease gamma subunit (EC 3.5.1.5)	* Bacillus amyloliquefaciens FZB42 Site: position = -204 score = 4.82967 sequence = ATGTAACCTTTCTTCACAT Gene: RBAM_033830: Urease gamma subunit (EC 3.5.1.5)	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1932: Urease gamma subunit (EC 3.5.1.5)	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -62 score = 4.99672 sequence = TTGTCATCAAAGATAACAT Site: position = -97 score = 4.57385 sequence = CTGTAATCTTTTCTAACAA Site: position = -166 score = 4.75948 sequence = TCGTTAGAAATCGTTACAT Gene: BH0252: Urease gamma subunit (EC 3.5.1.5)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -85 score = 5.43635 sequence = ATGTCATATTACCTAACAT Gene: Pjdr2_4328: Urease gamma subunit (EC 3.5.1.5)	Urease gamma subunit (EC 3.5.1.5)
ureB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU36650: Urease beta subunit (EC 3.5.1.5)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033820: Urease beta subunit (EC 3.5.1.5)	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1931: Urease beta subunit (EC 3.5.1.5)	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0253: Urease beta subunit (EC 3.5.1.5)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4327: Urease beta subunit (EC 3.5.1.5)	Urease beta subunit (EC 3.5.1.5)
ureC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU36640: Urease alpha subunit (EC 3.5.1.5)	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033810: Urease alpha subunit (EC 3.5.1.5)	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1930: Urease alpha subunit (EC 3.5.1.5)	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0254: Urease alpha subunit (EC 3.5.1.5)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4326: Urease alpha subunit (EC 3.5.1.5)	Urease alpha subunit (EC 3.5.1.5)
ureE	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1929: Urease accessory protein UreE	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0255: Urease accessory protein UreE	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Urease accessory protein UreE
ureF	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1928: Urease accessory protein UreF	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0256: Urease accessory protein UreF	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4325: Urease accessory protein UreF	Urease accessory protein UreF
ureG	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1927: Urease accessory protein UreG	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0257: Urease accessory protein UreG	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4324: Urease accessory protein UreG	Urease accessory protein UreG
ureD	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1926: Urease accessory protein UreD	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0258: Urease accessory protein UreD	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_4323: Urease accessory protein UreD	Urease accessory protein UreD
ureH	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426 Gene: GK1925: Urease accessory protein	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Urease accessory protein

CRON 5.
gltP	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -218 score = 5.24627 sequence = ATGTGAGGTTTTCTGACAT Gene: BC1432: Glutamate-aspartate carrier protein	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Glutamate-aspartate carrier protein

CRON 6.
alsT	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	* Bacillus cereus ATCC 14579 Site: position = -89 score = 5.45136 sequence = ATGTTATAAAACCTGACAT Site: position = -112 score = 4.21377 sequence = ATGTTAAAAGAGTTAACGT Gene: BC5051: Sodium/proton-dependent alanine carrier protein	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Sodium/proton-dependent alanine carrier protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GlnR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --