Regulog LexA - Cyanobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Phylum:	Cyanobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By trascription factor - LexA
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Statistics of regulated genes
Genome	Genes	Operons
Synechococcus sp. PCC 7002	2	2
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142	3	3
Cyanothece sp. PCC 8801	2	2
Cyanothece sp. PCC 7425	4	4
Microcystis aeruginosa NIES-843	2	2
Nostoc sp. PCC 7120	6	5
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313	4	4
Synechococcus sp. JA-3-3Ab	1	1
Synechococcus sp. WH 8102	3	2
Gloeobacter violaceus PCC 7421	1	1
Thermosynechococcus elongatus BP-1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
ssb	* Synechococcus sp. PCC 7002 Site: position = -25 score = 3.86994 sequence = AGAACAGTTGTATG Gene: SYNPCC7002_A0119: single-stranded DNA-binding protein	Synechocystis sp. PCC 6803 Gene: slr0925: single-stranded DNA-binding protein	Cyanothece sp. ATCC 51142 Gene: cce_2001: single-stranded DNA-binding protein	Cyanothece sp. PCC 8801 Gene: PCC8801_4131: single-stranded DNA-binding protein	* Cyanothece sp. PCC 7425 Site: position = -18 score = 4.10148 sequence = AGTACAGGTAAACT Gene: Cyan7425_1469: single-stranded DNA-binding protein	* Microcystis aeruginosa NIES-843 Site: position = -33 score = 4.33524 sequence = CATACTATTGTACT Gene: MAE_39060: single-stranded DNA-binding protein	* Nostoc sp. PCC 7120 Site: position = -28 score = 5.05542 sequence = AGTACTTATGTACT Gene: alr0088: single-stranded DNA-binding protein	Trichodesmium erythraeum IMS101 Gene: Tery_1149: single-stranded DNA-binding protein	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0301: single-stranded DNA-binding protein	Prochlorococcus marinus str. MIT 9313 Gene: PMT0141: single-stranded DNA-binding protein	Synechococcus sp. JA-3-3Ab Gene: CYA_2389: single-stranded DNA-binding protein	Synechococcus sp. WH 8102 Gene: SYNW0121: single-stranded DNA-binding protein	2 Gloeobacter violaceus PCC 7421 Gene: glr2487: single-stranded DNA-binding protein Gene: glr2942: single-stranded DNA-binding protein	Thermosynechococcus elongatus BP-1 Gene: 198211: single-stranded DNA-binding protein	single-stranded DNA-binding protein

CRON 2.
lexA	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1849: SOS-response repressor and protease LexA (EC 3.4.21.88)	Synechocystis sp. PCC 6803 Gene: sll1626: SOS-response repressor and protease LexA (EC 3.4.21.88)	2 Cyanothece sp. ATCC 51142* Gene: cce_5074: SOS-response repressor and protease LexA (EC 3.4.21.88) Site: position = -32 score = 4.74256 sequence = AGTACCCATGTTCT Gene: cce_1899: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Cyanothece sp. PCC 8801 Site: position = -75 score = 4.26038 sequence = AGTACTTATGTTCG Gene: PCC8801_2186: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Cyanothece sp. PCC 7425 Site: position = -131 score = 4.47536 sequence = GATACAAGTGTTCT Gene: Cyan7425_1233: SOS-response repressor and protease LexA (EC 3.4.21.88)	Microcystis aeruginosa NIES-843 Gene: MAE_38110: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Nostoc sp. PCC 7120 Site: position = -47 score = 4.78446 sequence = AGTACTAATGTTCT Gene: alr4908: SOS-response repressor and protease LexA (EC 3.4.21.88)	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	* Prochlorococcus marinus str. MIT 9313 Site: position = -28 score = 4.63423 sequence = GGTACACATGTATT Gene: PMT0380: SOS-response repressor and protease LexA (EC 3.4.21.88)	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1582: SOS-response repressor and protease LexA (EC 3.4.21.88)	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	SOS-response repressor and protease LexA (EC 3.4.21.88)

CRON 3.
recA	* Synechococcus sp. PCC 7002 Site: position = -64 score = 4.32327 sequence = AGTACGATTGAACT Gene: SYNPCC7002_A0426: Recombinase A	Synechocystis sp. PCC 6803 Gene: sll0569: Recombinase A	* Cyanothece sp. ATCC 51142 Site: position = -47 score = 4.75398 sequence = AATACTTTTGTACT Gene: cce_4639: Recombinase A	Cyanothece sp. PCC 8801 Gene: PCC8801_0945: Recombinase A	* Cyanothece sp. PCC 7425 Site: position = -39 score = 4.51624 sequence = AGTACGGATATACT Gene: Cyan7425_1671: Recombinase A	* Microcystis aeruginosa NIES-843 Site: position = -40 score = 4.63037 sequence = CATACTGCTGTACT Gene: MAE_16070: Recombinase A	* Nostoc sp. PCC 7120 Site: position = -66 score = 4.64478 sequence = AGTATATCTGTTCT Gene: all3272: Recombinase A	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	* Prochlorococcus marinus str. MIT 9313 Site: position = -145 score = 4.89804 sequence = GGTACGTCTGTACT Gene: PMT1727: Recombinase A	Synechococcus sp. JA-3-3Ab	* Synechococcus sp. WH 8102 Site: position = -78 score = 4.73884 sequence = CGTACGCCTGTACT Gene: SYNW2062: Recombinase A	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Recombinase A

CRON 4.
SYNPCC7002_A0856	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A0856: Conserved hypothetical protein, no COGs	Synechocystis sp. PCC 6803	* Cyanothece sp. ATCC 51142 Site: position = -34 score = 3.80599 sequence = ACTACACTTATATT Gene: cce_3128: Conserved hypothetical protein, no COGs	* Cyanothece sp. PCC 8801 Site: position = -47 score = 4.39557 sequence = ACTACACTTGTATT Gene: PCC8801_1259: Conserved hypothetical protein, no COGs	* Cyanothece sp. PCC 7425 Site: position = -52 score = 4.39557 sequence = ACTACACTTGTATT Gene: Cyan7425_4886: Conserved hypothetical protein, no COGs	Microcystis aeruginosa NIES-843 Gene: MAE_53810: Conserved hypothetical protein, no COGs	* Nostoc sp. PCC 7120 Site: position = -46 score = 4.39557 sequence = ACTACACTTGTATT Gene: all0854: Conserved hypothetical protein, no COGs	Trichodesmium erythraeum IMS101 Gene: Tery_4878: Conserved hypothetical protein, no COGs	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313	* Synechococcus sp. JA-3-3Ab Site: position = -39 score = 3.68525 sequence = GCTACAGGAGTAGT Gene: CYA_0805: Conserved hypothetical protein, no COGs	Synechococcus sp. WH 8102	* Gloeobacter violaceus PCC 7421 Site: position = -45 score = 4.19727 sequence = ACTACGGCTATACT Gene: gll1134: Conserved hypothetical protein, no COGs	Thermosynechococcus elongatus BP-1	Conserved hypothetical protein, no COGs

CRON 5.
umuD	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803 Gene: sll5123: DNA polymerase V, subunit D	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1549: DNA polymerase V, subunit D	* Prochlorococcus marinus str. MIT 9313 Site: position = -20 score = 4.37319 sequence = GGAACGGGTGTACT Gene: PMT0635: DNA polymerase V, subunit D	Synechococcus sp. JA-3-3Ab	* Synechococcus sp. WH 8102 Site: position = -39 score = 4.62588 sequence = AATACATCAGTACT Gene: SYNW1044: DNA polymerase V, subunit D	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	DNA polymerase V, subunit D
umuC	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803 Gene: sll5122: DNA polymerase V, subunit C	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1550: DNA polymerase V, subunit C	* Prochlorococcus marinus str. MIT 9313 Site: position = -52 score = 4.4543 sequence = AGTATCTTTGTACT Gene: PMT0638: DNA polymerase V, subunit C	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1043: DNA polymerase V, subunit C	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	DNA polymerase V, subunit C

CRON 6.
all4790	Synechococcus sp. PCC 7002	Synechocystis sp. PCC 6803	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 8801	Cyanothece sp. PCC 7425	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -45 score = 4.02646 sequence = CGTACATTTGTACC Gene: all4790: Conserved hypothetical protein	Trichodesmium erythraeum IMS101	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313 Gene: PMT0582: Conserved hypothetical protein	Synechococcus sp. JA-3-3Ab	Synechococcus sp. WH 8102 Gene: SYNW1092: Conserved hypothetical protein	Gloeobacter violaceus PCC 7421	Thermosynechococcus elongatus BP-1	Conserved hypothetical protein
recG	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A1856: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Synechocystis sp. PCC 6803 Gene: slr0020: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Cyanothece sp. ATCC 51142 Gene: cce_0327: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Cyanothece sp. PCC 8801 Gene: PCC8801_1498: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Cyanothece sp. PCC 7425 Gene: Cyan7425_4575: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Microcystis aeruginosa NIES-843 Gene: MAE_57930: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Nostoc sp. PCC 7120 Gene: all4789: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Trichodesmium erythraeum IMS101 Gene: Tery_1158: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Synechococcus elongatus PCC 7942	Prochlorococcus marinus str. MIT 9313 Gene: PMT0581: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Synechococcus sp. JA-3-3Ab Gene: CYA_2013: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Synechococcus sp. WH 8102 Gene: SYNW1093: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Gloeobacter violaceus PCC 7421 Gene: gvip187: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Thermosynechococcus elongatus BP-1 Gene: tll0735 (deprecated): ATP-dependent DNA helicase RecG (EC 3.6.1.-)	ATP-dependent DNA helicase RecG (EC 3.6.1.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog LexA - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --